MolNFT v1 · #261452 · protein

AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase a 1 (P52174)

P52174: “AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase a 1 (P52174)”. 2 pockets (best druggability 0.50). MolNFT v1 #261452 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

Accession: P52174
Type: protein
Length: 152 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x7c75F0f7d6d136A2b8D4C6C6e9b3D8a697949DF1
Molecule: Nucleoside diphosphate kinase a 1
UniProt: P52174
Pockets: 2 · best druggability 0.50

Structure

1 distinct chain · 49% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nucleoside diphosphate kinase a 1	protein	152	49% helix, 16% strand	P52174

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	198	0.50	0.76	27	empty
2	59	0.36	0.79	15	empty

Compared structures

1BHN · Nucleoside diphosphate kinase isoform a from bovine retina · an experimental structure of the same protein · chain A against A, TM-score 0.99
1BHN · Nucleoside diphosphate kinase isoform a from bovine retina · an experimental structure of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P52174
Elsewhere: UniProt P52174 · AlphaFold DB P52174

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