MolNFT v1 · #261427 · protein
AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase II, chloroplastic (O64903)
O64903: “AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase II, chloroplastic (O64903)”. 2 pockets (best druggability 0.47). MolNFT v1 #261427 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- O64903
- Type
- protein
- Length
- 231 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x54845eE8b01D7512f3AfFaC0fa1a19a5Bcac5CB8
- Molecule
- Nucleoside diphosphate kinase II, chloroplastic
- UniProt
- O64903
- Pockets
- 2 · best druggability 0.47
Structure
1 distinct chain · 32% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoside diphosphate kinase II, chloroplastic | protein | 231 | 32% helix, 12% strand | O64903 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 177 | 0.47 | 0.76 | 28 | empty |
| 2 | 102 | 0.43 | 0.78 | 19 | empty |
Compared structures
- 1S57 · Crystal structure of nucleoside diphosphate kinase 2 from arabidopsis · an experimental structure of the same protein · chain A against A, TM-score 0.66
- 1S57 · crystal structure of nucleoside diphosphate kinase 2 from Arabidopsis · an experimental structure of the same protein · chain A against A, TM-score 0.66
- 1S59 · Structure of nucleoside diphosphate kinase 2 with bound dGTP from Arabidopsis · an experimental structure of the same protein · chain A against A, TM-score 0.66
- 1S59 · Structure of nucleoside diphosphate kinase 2 with bound dgtp from arabidopsis · an experimental structure of the same protein · chain A against A, TM-score 0.66
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O64903
- Elsewhere: UniProt O64903 · AlphaFold DB O64903
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