MolNFT v1 · #251939 · protein
AlphaFold monomer V2.0 prediction for udp-N-acetylmuramoyl-L-alanyl- D-glutamate--2,6-diaminopimelate ligase (Q04Y85)
Q04Y85 · Udp-N-acetylmuramoyl-L-alanyl-D-glutamate…: “AlphaFold monomer V2.0 prediction for udp-N-acetylmuramoyl-L-alanyl- D-glutamate--2,6-diaminopimelate ligase…”. 4 pockets (best druggability 0.67). MolNFT v1 #251939 on GenesisL1: 3D…
- Accession
- Q04Y85
- Type
- protein
- Length
- 500 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7F0F83db3b9ec3a86cc0eDAaF6DE0950a3Ce107D
- Molecule
- Udp-N-acetylmuramoyl-L-alanyl-D-glutamate-- 2,6-diaminopimelate ligase
- UniProt
- Q04Y85
- Pockets
- 4 · best druggability 0.67
Structure
1 distinct chain · 35% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-N-acetylmuramoyl-L-alanyl-D-glutamate-- 2,6-diaminopimelate ligase | protein | 500 | 35% helix, 24% strand | Q04Y85 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 489 | 0.67 | 0.79 | 72 | empty |
| 2 | 168 | 0.61 | 0.84 | 25 | empty |
| 3 | 108 | 0.38 | 0.75 | 18 | empty |
| 4 | 92 | 0.34 | 0.74 | 21 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q04Y85
- Elsewhere: UniProt Q04Y85 · AlphaFold DB Q04Y85
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