MolNFT v1 · #245551 · protein
AlphaFold monomer V2.0 prediction for merozoite surface protein 1 (P13828)
P13828: “AlphaFold monomer V2.0 prediction for merozoite surface protein 1 (P13828)”. 20 pockets (best druggability 0.72). MolNFT v1 #245551 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P13828
- Type
- protein
- Length
- 1,772 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x025f3b1a898b05AD2731bE6Ab72687b5920c4A3F
- Molecule
- Merozoite surface protein 1
- UniProt
- P13828
- Pockets
- 20 · best druggability 0.72
Structure
1 distinct chain · 56% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Merozoite surface protein 1 | protein | 1772 | 56% helix, 2% strand | P13828 |
Pockets
20 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1073 | 0.72 | 0.75 | 87 | empty |
| 2 | 408 | 0.66 | 0.79 | 34 | empty |
| 3 | 397 | 0.64 | 0.78 | 42 | empty |
| 4 | 378 | 0.60 | 0.76 | 37 | empty |
| 5 | 399 | 0.57 | 0.74 | 36 | empty |
Modifications
Observed in the structure: 9 disulfide (disulfide).
Compared structures
- 2MGP · Structure of Plasmodium Yoelii Merozoite Surface Protein 1 - C-terminal Domain · an experimental structure of the same protein · chain A against A, TM-score 0.05
- 2MGP · Structure of plasmodium yoelii merozoite surface protein 1 - C- terminal domain · an experimental structure of the same protein · chain A against A, TM-score 0.05
- 2MGR · Structure of Plasmodium Yoelii Merozoite Surface Protein 1 - C-terminal Domain, E28K… · an experimental structure of the same protein · chain A against A, TM-score 0.05
- 2MGR · Structure of plasmodium yoelii merozoite surface protein 1 - C- terminal domain, E28K… · an experimental structure of the same protein · chain A against A, TM-score 0.05
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13828
- Elsewhere: UniProt P13828 · AlphaFold DB P13828
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