MolNFT v1 · #242281 · protein
AlphaFold monomer V2.0 prediction for periplasmic murein peptide- binding protein (P77348)
P77348 · Periplasmic murein peptide-binding protein: “AlphaFold monomer V2.0 prediction for periplasmic murein peptide- binding protein (P77348)”. 4 pockets (best druggability 0.81). MolNFT v1 #242281 on GenesisL1: 3D structure, binding…
- Accession
- P77348
- Type
- protein
- Length
- 537 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xBeB220F0B5b0C48F46B5DDd3E3b071BC0827f8D6
- Molecule
- Periplasmic murein peptide-binding protein
- UniProt
- P77348
- Pockets
- 4 · best druggability 0.81
Structure
1 distinct chain · 33% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic murein peptide-binding protein | protein | 537 | 33% helix, 21% strand | P77348 |
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 435 | 0.81 | 0.89 | 70 | empty |
| 2 | 86 | 0.64 | 0.90 | 23 | empty |
| 3 | 223 | 0.58 | 0.79 | 28 | empty |
| 4 | 137 | 0.53 | 0.81 | 26 | empty |
Compared structures
- 3O9P · The structure of the Escherichia coli murein tripeptide binding protein MppA · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 3O9P · The structure of the escherichia COLI murein tripeptide binding protein mppa · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 4TOZ · MppA Periplasmic Murein Tripeptide Binding Protein, Unliganded Open Form · an experimental structure of the same protein · chain A against A, TM-score 0.71
- 4TOZ · Mppa periplasmic murein tripeptide binding protein, unliganded open form · an experimental structure of the same protein · chain A against A, TM-score 0.71
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P77348
- Elsewhere: UniProt P77348 · AlphaFold DB P77348
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