MolNFT v1 · #174626 · protein
AlphaFold monomer V2.0 prediction for minor histocompatibility antigen H13 (Q9D8V0)
Q9D8V0: “AlphaFold monomer V2.0 prediction for minor histocompatibility antigen H13 (Q9D8V0)”. 5 pockets (best druggability 0.77). MolNFT v1 #174626 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q9D8V0
- Type
- protein
- Length
- 378 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xdF2b063d4B94F3f46D117B1af99A846bD4a59284
- Molecule
- Minor histocompatibility antigen H13
- UniProt
- Q9D8V0
- Pockets
- 5 · best druggability 0.77
Structure
1 distinct chain · 67% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Minor histocompatibility antigen H13 | protein | 378 | 67% helix, 9% strand | Q9D8V0 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 782 | 0.77 | 0.80 | 60 | empty |
| 2 | 259 | 0.60 | 0.80 | 28 | empty |
| 3 | 121 | 0.44 | 0.77 | 19 | empty |
| 4 | 101 | 0.43 | 0.78 | 14 | empty |
| 5 | 94 | 0.36 | 0.74 | 14 | empty |
Compared structures
- 1JUF · Structure of Minor Histocompatibility Antigen peptide, H13b, complexed to H2-Db · an experimental structure of the same protein · chain A against C, TM-score 0.02
- 1JUF · Structure of minor histocompatibility antigen peptide, H13B, complexed to H2-db · an experimental structure of the same protein · chain A against C, TM-score 0.02
- 1INQ · Structure of Minor Histocompatibility Antigen peptide, H13a, complexed to H2-Db · an experimental structure of the same protein · chain A against C, TM-score 0.02
- 1INQ · Structure of minor histocompatibility antigen peptide, H13A, complexed to H2-db · an experimental structure of the same protein · chain A against C, TM-score 0.02
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9D8V0
- Elsewhere: UniProt Q9D8V0 · AlphaFold DB Q9D8V0
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