MolNFT v2 · #14561 · protein
1MCY: Sperm whale myoglobin (mutant with initiator met and with his 64 replaced by gln, leu 29 replaced by phe
1MCY · Myoglobin (carbonmonoxy): “Sperm whale myoglobin (mutant with initiator met and with his 64 replaced by gln, leu 29 replaced by phe”. X-ray diffraction at 1.7, 3 ligands (HEM, SO4, CMO), 1 pocket (best druggability 0.72). MolNFT v2…
- PDB
- 1MCY
- Type
- protein
- Length
- 154 residues
- Chains
- 1
- Method
- x-ray diffraction
- Authors
- Li, T., Phillips Jr., G.N.
- Deposited
- 07/19/95
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.7
- Source
- Physeter catodon
- Molecule
- Myoglobin (carbonmonoxy)
- UniProt
- P02185
- Ligands
- HEM, SO4, CMO
- Pockets
- 1 · best druggability 0.72
Structure
x-ray diffraction · resolution 1.7 · 1 distinct chain · 80% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Myoglobin (carbonmonoxy) | protein | 154 | 80% helix, 0% strand | P02185 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
- CMO · Carbon monoxide · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 224 | 0.72 | 0.87 | 29 | HEM, CMO |
Compared structures
- 1MCY · Sperm whale myoglobin (mutant with initiator met and with his 64 replaced by gln, leu 29… · the same entry in another collection · chain A against A, TM-score 1.00
- P02185 · AlphaFold monomer V2.0 prediction for myoglobin (P02185) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02185
- Elsewhere: RCSB PDB 1MCY · PDBe 1MCY · UniProt P02185
Other records of 1MCY
- 1MCY-2 · MolNFT v1 / PDB · Sperm whale myoglobin (mutant with initiator met and with his 64 replaced by gln, leu 29…
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