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MolNFT v2 · #3148 · protein

1CIO: Recombinant sperm whale myoglobin I99V mutant (met)

1CIO · Protein (myoglobin): “Recombinant sperm whale myoglobin I99V mutant (met)”. X-ray diffraction at 1.6, 2 ligands (HEM, SO4), 1 pocket (best druggability 0.71). MolNFT v2 #3148 on GenesisL1: 3D structure, binding sites and pockets in…

3D structure of 1CIO: Recombinant sperm whale myoglobin I99V mutant (met) (MolNFT v2 / PDB Bank)
3D structure of 1CIO: Recombinant sperm whale myoglobin I99V mutant (met) (MolNFT v2 / PDB Bank)
PDB
1CIO
Type
protein
Length
154 residues
Chains
1
Method
x-ray diffraction
Authors
Liong, E.C., Phillips Jr., G.N.
Deposited
04/01/99
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.6
Source
Physeter catodon
Molecule
Protein (myoglobin)
UniProt
P02185
Ligands
HEM, SO4
Pockets
1 · best druggability 0.71

Structure

x-ray diffraction · resolution 1.6 · 1 distinct chain · 80% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AProtein (myoglobin)protein15480% helix, 0% strandP02185

Ligands and binding sites

  • HEM · Protoporphyrin IX containing Fe · ligand · chains A
  • SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12270.710.8628HEM

Compared structures

  • 1CIO · Recombinant sperm whale myoglobin I99V mutant (met) · the same entry in another collection · chain A against A, TM-score 1.00
  • P02185 · AlphaFold monomer V2.0 prediction for myoglobin (P02185) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Other records of 1CIO

  • 1CIO-2 · MolNFT v1 / PDB · Recombinant sperm whale myoglobin I99V mutant (met)

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