MolNFT v2 · #3 · protein
101M: Sperm whale myoglobin F46V N-butyl isocyanide at pH 9.0
101M: “Sperm whale myoglobin F46V N-butyl isocyanide at pH 9.0”. X-ray diffraction at 2.07, 3 ligands (HEM, NBN, SO4), 1 pocket (best druggability 0.71). MolNFT v2 #3 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 101M
- Type
- protein
- Length
- 154 residues
- Chains
- 1
- Method
- x-ray diffraction
- Authors
- Smith, R.D., Olson, J.S., Phillips Jr., G.N.
- Deposited
- 12/13/97
- Collection
- MolNFT
- Contract
- 0x08363bae41CBeD54a47FC1e6eeE29bf6f00Cb2ba
- Owner
- 0xF80704d7b5fE70cd0C222aD976c42d16A10fdfeA
- Resolution
- 2.07
- Source
- Physeter catodon
- Molecule
- Myoglobin
- UniProt
- P02185
- Ligands
- HEM, NBN, SO4
- Pockets
- 1 · best druggability 0.71
Structure
x-ray diffraction · resolution 2.07 · 1 distinct chain · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Myoglobin | protein | 154 | 79% helix, 0% strand | P02185 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- NBN · N-butyl isocyanide · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 265 | 0.71 | 0.85 | 29 | HEM, NBN |
Compared structures
- 101M · Sperm whale myoglobin F46V N-butyl isocyanide at pH 9.0 · the same entry in another collection · chain A against A, TM-score 1.00
- 101M · Sperm whale myoglobin F46V N-butyl isocyanide at pH 9.0 · the same entry in another collection · chain A against A, TM-score 1.00
- P02185 · AlphaFold monomer V2.0 prediction for myoglobin (P02185) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02185
- Elsewhere: RCSB PDB 101M · PDBe 101M · UniProt P02185
Other records of 101M
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