UniProt Q9VKJ9
de novo designed binder (Q9VKJ9)
de novo designed binder (UniProt Q9VKJ9): 6 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 7 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q9VKJ9
- Protein
- de novo designed binder
- Experimental structures
- 6
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 7 · 2 records with a druggable one
Structures
7 records of Q9VKJ9 in the MolNFT archive: 6 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5VO5 | Crystal structure of Lgd-Shrub complex, single chain fusion | x-ray diffraction | A | — | — |
| 5VO5 | Crystal structure of lgd-shrub complex, single chain fusion | x-ray diffraction | A | — | — |
| 6EI6 | CC2D1B coordinates ESRCT-III activity during the mitotic reformation of the nuclear envelope | x-ray diffraction | A, B | SO4 | 6 (best 0.54) |
| 6EI6 | CC2D1B coordinates esrct-III activity during the mitotic reformation of the nuclear envelope | x-ray diffraction | A, B | SO4 | — |
| 7ZSD | cryo-EM structure of omicron spike in complex with de novo designed binder, local | electron microscopy | P | — | 1 (best 0.52) |
| 7ZSS | cryo-EM structure of D614 spike in complex with de novo designed binder | electron microscopy | D, P, h | — | — |
| Q9VKJ9 | AlphaFold monomer V2.0 prediction for coiled-coil and C2 domain- containing protein 1-like (Q9VKJ9) | predicted | A | — | — |
Ligands
- SO4 · Sulfate ion · in 2 records
Experiment against prediction
- 7ZSS chain P against the predicted model Q9VKJ9: TM-score 0.91, RMSD 1.28 Å
- 7ZSS chain D against the predicted model Q9VKJ9: TM-score 0.90, RMSD 1.28 Å
- 7ZSS chain h against the predicted model Q9VKJ9: TM-score 0.90, RMSD 1.32 Å
- 7ZSD chain P against the predicted model Q9VKJ9: TM-score 0.88, RMSD 1.38 Å
- 6EI6 chain B against the predicted model Q9VKJ9: TM-score 0.62, RMSD 2.15 Å
- 6EI6 chain B against the predicted model Q9VKJ9: TM-score 0.62, RMSD 2.15 Å
- 6EI6 chain A against the predicted model Q9VKJ9: TM-score 0.62, RMSD 2.16 Å
- 6EI6 chain A against the predicted model Q9VKJ9: TM-score 0.62, RMSD 2.16 Å
- 5VO5 chain A against the predicted model Q9VKJ9: TM-score 0.42, RMSD 3.21 Å
- 5VO5 chain A against the predicted model Q9VKJ9: TM-score 0.42, RMSD 3.21 Å
Elsewhere
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