UniProt Q9RQJ2
Peptidylarginine deiminase (Q9RQJ2)
Peptidylarginine deiminase (UniProt Q9RQJ2), EC 3.5.3.-: 12 experimental structures and 1 predicted model on GenesisL1, 2 ligands bound, 7 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q9RQJ2
- Protein
- Peptidylarginine deiminase
- EC
- 3.5.3.-
- Experimental structures
- 12
- Predicted models
- 1
- Ligands
- 2
- Pockets
- 7 · 2 records with a druggable one
Structures
13 records of Q9RQJ2 in the MolNFT archive: 12 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4YT9 | Crystal structure of Porphyromonas gingivalis peptidylarginine deiminase (PPAD) substrate-unbound. | x-ray diffraction | A | — | — |
| 4YT9 | Crystal structure of porphyromonas gingivalis peptidylarginine deiminase (ppad) substrate-unbound. | x-ray diffraction | A | — | — |
| 4YTB | Crystal structure of Porphyromonas gingivalis peptidylarginine deiminase (PPAD) in complex with… | x-ray diffraction | A | — | — |
| 4YTB | Crystal structure of porphyromonas gingivalis peptidylarginine deiminase (ppad) in complex with… | x-ray diffraction | A | — | — |
| 4YTG | Crystal structure of Porphyromonas gingivalis peptidylarginine deiminase (PPAD) mutant C351A in… | x-ray diffraction | A | — | — |
| 4YTG | Crystal structure of porphyromonas gingivalis peptidylarginine deiminase (ppad) mutant C351A in… | x-ray diffraction | A | — | — |
| 5AK7 | Structure of wt Porphyromonas gingivalis peptidylarginine deiminase | x-ray diffraction | A | NA | 2 (best 0.74) |
| 5AK7 | Structure of wt porphyromonas gingivalis peptidylarginine deiminase | x-ray diffraction | A | — | — |
| 5AK8 | Structure of C351A mutant of Porphyromonas gingivalis peptidylarginine deiminase | x-ray diffraction | A | — | — |
| 5AK8 | Structure of C351A mutant of porphyromonas gingivalis peptidylarginine deiminase | x-ray diffraction | A | — | — |
| 6I0X | Porphyromonas gingivalis peptidylarginine deminase (PPAD) mutant G231N/E232T/N235D in complex with… | x-ray diffraction | A, B | NA, BFB | — |
| 6I0X | Porphyromonas gingivalis peptidylarginine deminase (ppad) mutant G231N/E232T/N235D in complex with… | x-ray diffraction | A, B | NA, BFB | — |
| Q9RQJ2 | AlphaFold monomer V2.0 prediction for peptidylarginine deiminase (Q9RQJ2) | predicted | A | — | 5 (best 0.72) |
Ligands
Experiment against prediction
- 6I0X chain B against the predicted model Q9RQJ2: TM-score 1.00, RMSD 0.39 Å
- 6I0X chain B against the predicted model Q9RQJ2: TM-score 1.00, RMSD 0.39 Å
- 6I0X chain A against the predicted model Q9RQJ2: TM-score 1.00, RMSD 0.39 Å
- 6I0X chain A against the predicted model Q9RQJ2: TM-score 1.00, RMSD 0.39 Å
- 4YTB chain A against the predicted model Q9RQJ2: TM-score 0.99, RMSD 0.17 Å
- 4YTB chain A against the predicted model Q9RQJ2: TM-score 0.99, RMSD 0.17 Å
- 4YTG chain A against the predicted model Q9RQJ2: TM-score 0.99, RMSD 0.54 Å
- 4YTG chain A against the predicted model Q9RQJ2: TM-score 0.99, RMSD 0.54 Å
- 5AK8 chain A against the predicted model Q9RQJ2: TM-score 0.99, RMSD 0.60 Å
- 5AK8 chain A against the predicted model Q9RQJ2: TM-score 0.99, RMSD 0.60 Å
Elsewhere
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.