UniProt Q9QZ88
Vacuolar protein sorting-associated protein 29 (Q9QZ88)
Vacuolar protein sorting-associated protein 29 (UniProt Q9QZ88): 19 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 40 pockets. Binding sites, druggability and experiment against prediction (TM-score)…
- UniProt
- Q9QZ88
- Protein
- Vacuolar protein sorting-associated protein 29
- Experimental structures
- 19
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 40 · 5 records with a druggable one
Structures
20 records of Q9QZ88 in the MolNFT archive: 19 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1Z2W | Crystal structure of mouse Vps29 complexed with Mn2+ | x-ray diffraction | A, B | — | — |
| 1Z2W | Crystal structure of mouse VPS29 complexed with MN2+ | x-ray diffraction | A, B | — | — |
| 1Z2X | Crystal structure of mouse Vps29 | x-ray diffraction | A, B | — | — |
| 1Z2X | Crystal structure of mouse VPS29 | x-ray diffraction | A, B | — | — |
| 3PSN | Crystal structure of mouse VPS29 complexed with Mn2+ | x-ray diffraction | A, B | — | — |
| 3PSN | Crystal structure of mouse VPS29 complexed with MN2+ | x-ray diffraction | A, B | — | — |
| 3PSO | Crystal structure of mouse VPS29 complexed with Zn2+ | x-ray diffraction | A, B | — | — |
| 3PSO | Crystal structure of mouse VPS29 complexed with ZN2+ | x-ray diffraction | A, B | — | — |
| 6TL0 | Solution structure and 1H, 13C and 15N chemical shift assignments for the complex of VPS29 with… | solution nmr | A | — | 2 (best 0.35) |
| 6TL0 | Solution structure and 1H, 13C and 15N chemical shift assignments for the complex of VPS29 with… | solution nmr | A | — | — |
| 6VAB | Mouse retromer sub-structure: VPS35/VPS35 flat dimer | electron microscopy | A, C | — | 13 (best 0.72) |
| 6VAB | Mouse retromer sub-structure: VPS35/VPS35 flat dimer | electron microscopy | A, C | — | — |
| 6VAC | Mouse retromer (VPS26/VPS35/VPS29) heterotrimer | electron microscopy | C | — | — |
| 6VAC | Mouse retromer (VPS26/VPS35/VPS29) heterotrimer | electron microscopy | C | — | — |
| 7U6F | Mouse retromer (VPS26/VPS35/VPS29) heterotrimers | electron microscopy | B4 | — | 5 (best 0.81) |
| 8FUD | Crystal structure of Vps29 in complex with Chaetomium thermophilum Vps5 (71 to 80) | x-ray diffraction | A, B | PO4 | 1 (best 0.58) |
| 8TTA | Structure of retromer VPS29-VPS35 (483-796) complexed with Fam21A repeat 21 (1328-1341) | x-ray diffraction | A, C | — | 9 (best 0.78) |
| 8TTC | Structure of retromer VPS29-VPS35 (483-796) complexed with Fam21A repeat 20 (1289-1302) | x-ray diffraction | A, C | — | 10 (best 0.70) |
| 8TTD | Structure of VPS29 complexed with Fam21A repeat 21 (1328-1341) | x-ray diffraction | A | — | — |
| Q9QZ88 | AlphaFold monomer V2.0 prediction for vacuolar protein sorting- associated protein 29 (Q9QZ88) | predicted | A | — | — |
Ligands
- PO4 · Phosphate ion · in 1 record
Experiment against prediction
- 8FUD chain A against the predicted model Q9QZ88: TM-score 0.97, RMSD 0.37 Å
- 8TTD chain A against the predicted model Q9QZ88: TM-score 0.98, RMSD 0.47 Å
- 8TTC chain C against the predicted model Q9QZ88: TM-score 0.98, RMSD 0.70 Å
- 8TTA chain C against the predicted model Q9QZ88: TM-score 0.95, RMSD 0.71 Å
- 6TL0 chain A against the predicted model Q9QZ88: TM-score 0.93, RMSD 0.73 Å
- 6TL0 chain A against the predicted model Q9QZ88: TM-score 0.93, RMSD 0.73 Å
- 8TTA chain A against the predicted model Q9QZ88: TM-score 0.97, RMSD 0.77 Å
- 8TTC chain A against the predicted model Q9QZ88: TM-score 0.98, RMSD 0.80 Å
- 7U6F chain B4 against the predicted model Q9QZ88: TM-score 0.97, RMSD 0.96 Å
- 6VAC chain C against the predicted model Q9QZ88: TM-score 0.96, RMSD 1.03 Å
Elsewhere
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.