UniProt Q9KM17
D-alanine--D-alanine ligase (Q9KM17)
D-alanine--D-alanine ligase (UniProt Q9KM17), EC 6.3.2.4: 2 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 6 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q9KM17
- Protein
- D-alanine--D-alanine ligase
- EC
- 6.3.2.4
- Experimental structures
- 2
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 6 · 1 record with a druggable one
Structures
3 records of Q9KM17 in the MolNFT archive: 2 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 6DGI | The crystal structure of D-alanyl-alanine synthetase A from Vibrio cholerae O1 biovar eltor str.… | x-ray diffraction | A, B | MG | 6 (best 0.68) |
| 6DGI | The crystal structure of D-alanyl-alanine synthetase a from vibrio cholerae O1 biovar eltor str.… | x-ray diffraction | A, B | MG | — |
| Q9KM17 | AlphaFold monomer V2.0 prediction for D-alanine--D-alanine ligase (Q9KM17) | predicted | A | — | — |
Ligands
- MG · Magnesium ion · in 2 records
Experiment against prediction
- 6DGI chain B against the predicted model Q9KM17: TM-score 0.97, RMSD 1.39 Å
- 6DGI chain B against the predicted model Q9KM17: TM-score 0.97, RMSD 1.39 Å
- 6DGI chain A against the predicted model Q9KM17: TM-score 0.96, RMSD 1.61 Å
- 6DGI chain A against the predicted model Q9KM17: TM-score 0.96, RMSD 1.61 Å
Elsewhere
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