UniProt Q9I5U2
LPS-assembly protein LptD (Q9I5U2)
LPS-assembly protein LptD (UniProt Q9I5U2): 4 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 68 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q9I5U2
- Protein
- LPS-assembly protein LptD
- Experimental structures
- 4
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 68 · 4 records with a druggable one
Structures
5 records of Q9I5U2 in the MolNFT archive: 4 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5IVA | The LPS Transporter LptDE from Pseudomonas aeruginosa, core complex | x-ray diffraction | A | — | 13 (best 0.81) |
| 5IVA | The lps transporter lptde from pseudomonas aeruginosa, core complex | x-ray diffraction | A | — | — |
| 8H1R | Crystal structure of LptDE-YifL complex | x-ray diffraction | A, D | PCJ | 20 (best 0.85) |
| 8H1S | Crystal structure of apo-LptDE complex | x-ray diffraction | C, A | — | 20 (best 0.85) |
| Q9I5U2 | AlphaFold monomer V2.0 prediction for lps-assembly protein lptd (Q9I5U2) | predicted | A | — | 15 (best 0.79) |
Ligands
- PCJ · (2R)-3-{[(2S)-3-hydroxy-2-(palmitoylamino)propyl]thio}propane-1,2-diyl dihexadecanoate · in 1 record
Experiment against prediction
- 8H1R chain A against the predicted model Q9I5U2: TM-score 0.94, RMSD 2.57 Å
- 5IVA chain A against the predicted model Q9I5U2: TM-score 0.93, RMSD 2.57 Å
- 5IVA chain A against the predicted model Q9I5U2: TM-score 0.93, RMSD 2.57 Å
- 8H1R chain D against the predicted model Q9I5U2: TM-score 0.93, RMSD 2.89 Å
- 8H1S chain C against the predicted model Q9I5U2: TM-score 0.92, RMSD 3.04 Å
- 8H1S chain A against the predicted model Q9I5U2: TM-score 0.91, RMSD 3.38 Å
Elsewhere
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