UniProt Q9D2U9
Histone H2B type 3-A (Q9D2U9)
Histone H2B type 3-A (UniProt Q9D2U9): 13 experimental structures and 1 predicted model on GenesisL1, 12 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q9D2U9
- Protein
- Histone H2B type 3-A
- Experimental structures
- 13
- Predicted models
- 1
- Pockets
- 12 · 1 record with a druggable one
Structures
14 records of Q9D2U9 in the MolNFT archive: 13 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1U35 | Crystal structure of the nucleosome core particle containing the histone domain of macroH2A | x-ray diffraction | D, H | — | — |
| 1U35 | Crystal structure of the nucleosome core particle containing the histone domain of MACROH2A | x-ray diffraction | D, H | — | — |
| 2F8N | 2.9 Angstrom X-ray structure of hybrid macroH2A nucleosomes | x-ray diffraction | D | — | — |
| 2F8N | 2.9 ångström X-ray structure of hybrid MACROH2A nucleosomes | x-ray diffraction | D | — | — |
| 5B1L | The mouse nucleosome structure containing H3t | x-ray diffraction | D, H | — | — |
| 5B1L | The mouse nucleosome structure containing H3T | x-ray diffraction | D, H | — | — |
| 5B1M | The mouse nucleosome structure containing H3.1 | x-ray diffraction | D, H | — | 12 (best 0.67) |
| 5B1M | The mouse nucleosome structure containing H3.1 | x-ray diffraction | D, H | — | — |
| 5XM0 | The mouse nucleosome structure containing H2A, H2B type3-A, H3.3, and H4 | x-ray diffraction | D, H | — | — |
| 5XM0 | The mouse nucleosome structure containing H2A, H2B TYPE3-a, H3.3, and H4 | x-ray diffraction | D, H | — | — |
| 5XM1 | The mouse nucleosome structure containing H2A, H2B TYPE3-a, H3MM7, and H4 | x-ray diffraction | D, H | — | — |
| 7DBH | The mouse nucleosome structure containing H3MM18 | electron microscopy | D, H | — | — |
| 7VBM | The mouse nucleosome structure containing H3MM18 aided by PL2-6 scfv | electron microscopy | D, H | — | — |
| Q9D2U9 | AlphaFold monomer V2.0 prediction for histone H2B type 3-a (Q9D2U9) | predicted | A | — | — |
Experiment against prediction
- 5XM1 chain H against the predicted model Q9D2U9: TM-score 0.90, RMSD 1.48 Å
- 5B1M chain H against the predicted model Q9D2U9: TM-score 0.90, RMSD 1.53 Å
- 5B1M chain H against the predicted model Q9D2U9: TM-score 0.90, RMSD 1.53 Å
- 7VBM chain D against the predicted model Q9D2U9: TM-score 0.90, RMSD 1.55 Å
- 7VBM chain H against the predicted model Q9D2U9: TM-score 0.89, RMSD 1.62 Å
- 5B1L chain H against the predicted model Q9D2U9: TM-score 0.89, RMSD 1.57 Å
- 5B1L chain H against the predicted model Q9D2U9: TM-score 0.89, RMSD 1.57 Å
- 5B1L chain D against the predicted model Q9D2U9: TM-score 0.89, RMSD 1.64 Å
- 5B1L chain D against the predicted model Q9D2U9: TM-score 0.89, RMSD 1.64 Å
- 5XM0 chain H against the predicted model Q9D2U9: TM-score 0.89, RMSD 1.62 Å
Elsewhere
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