UniProt Q92484

Q92484

Q92484 (UniProt Q92484): 4 experimental structures and 1 predicted model on GenesisL1, 5 ligands bound. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.

UniProt: Q92484
Experimental structures: 4
Predicted models: 1
Ligands: 5

Structures

5 records of Q92484 in the MolNFT archive: 4 experimental, 1 predicted.

Entry	Title	Method	Chains	Ligands	Pockets
5EBB	Structure of human sphingomyelinase phosphodiesterase like 3A (SMPDL3A) with Zn2+	x-ray diffraction	A, B, C	ZN, NAG	—
5EBB	Structure of human sphingomyelinase phosphodiesterase like 3A (SMPDL3A) with ZN2+	x-ray diffraction	A, B, C	—	—
5EBE	Structure of human sphingomyelinase phosphodiesterase like 3A (SMPDL3A) with 5' CMP	x-ray diffraction	A, B, C	NAG, ZN, C5P, RP5, SCN	—
5EBE	Structure of human sphingomyelinase phosphodiesterase like 3A (SMPDL3A) with 5' cmp	x-ray diffraction	A, B, C	—	—
Q92484	AlphaFold monomer V2.0 prediction for acid sphingomyelinase-like phosphodiesterase 3A (Q92484)	predicted	A	—	—

Ligands

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · in 2 records
ZN · Zinc ion · in 2 records
C5P · Cytidine-5'-monophosphate · in 1 record
RP5 · 5-O-phosphono-beta-D-ribofuranose · in 1 record
SCN · Thiocyanate ion · in 1 record

Experiment against prediction

5EBB chain A against the predicted model Q92484: TM-score 1.00, RMSD 0.34 Å
5EBB chain A against the predicted model Q92484: TM-score 1.00, RMSD 0.34 Å
5EBB chain B against the predicted model Q92484: TM-score 1.00, RMSD 0.34 Å
5EBB chain B against the predicted model Q92484: TM-score 1.00, RMSD 0.34 Å
5EBB chain C against the predicted model Q92484: TM-score 1.00, RMSD 0.38 Å
5EBB chain C against the predicted model Q92484: TM-score 1.00, RMSD 0.38 Å
5EBE chain C against the predicted model Q92484: TM-score 1.00, RMSD 0.62 Å
5EBE chain C against the predicted model Q92484: TM-score 1.00, RMSD 0.62 Å
5EBE chain B against the predicted model Q92484: TM-score 0.99, RMSD 0.66 Å
5EBE chain B against the predicted model Q92484: TM-score 0.99, RMSD 0.66 Å

Elsewhere

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