UniProt Q8NP73
Diaminopimelate epimerase (Q8NP73)
Diaminopimelate epimerase (UniProt Q8NP73), EC 5.1.1.7: 6 experimental structures and 1 predicted model on GenesisL1, 2 ligands bound, 3 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q8NP73
- Protein
- Diaminopimelate epimerase
- EC
- 5.1.1.7
- Experimental structures
- 6
- Predicted models
- 1
- Ligands
- 2
- Pockets
- 3 · 1 record with a druggable one
Structures
7 records of Q8NP73 in the MolNFT archive: 6 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5H2G | Crystal structure of oxidized DapF from Corynebacterium glutamicum | x-ray diffraction | A, B | SO4 | — |
| 5H2G | Crystal structure of oxidized dapf from corynebacterium glutamicum | x-ray diffraction | A, B | — | — |
| 5H2Y | Crystal structure of reduced DapF from Corynebacterium glutamicum | x-ray diffraction | A, B | — | 3 (best 0.58) |
| 5H2Y | Crystal structure of reduced dapf from corynebacterium glutamicum | x-ray diffraction | A, B | — | — |
| 5M47 | Crystal structure of DapF from Corynebacterium glutamicum in complex with D,L-diaminopimelate | x-ray diffraction | A | API | — |
| 5M47 | Crystal structure of dapf from corynebacterium glutamicum in complex with D,L-diaminopimelate | x-ray diffraction | A | API | — |
| Q8NP73 | AlphaFold monomer V2.0 prediction for diaminopimelate epimerase (Q8NP73) | predicted | A | — | — |
Ligands
Experiment against prediction
- 5H2Y chain B against the predicted model Q8NP73: TM-score 0.99, RMSD 0.51 Å
- 5H2Y chain B against the predicted model Q8NP73: TM-score 0.99, RMSD 0.51 Å
- 5H2G chain A against the predicted model Q8NP73: TM-score 0.99, RMSD 0.53 Å
- 5H2G chain A against the predicted model Q8NP73: TM-score 0.99, RMSD 0.53 Å
- 5H2Y chain A against the predicted model Q8NP73: TM-score 0.99, RMSD 0.59 Å
- 5H2Y chain A against the predicted model Q8NP73: TM-score 0.99, RMSD 0.59 Å
- 5H2G chain B against the predicted model Q8NP73: TM-score 0.97, RMSD 0.80 Å
- 5H2G chain B against the predicted model Q8NP73: TM-score 0.97, RMSD 0.80 Å
- 5M47 chain A against the predicted model Q8NP73: TM-score 0.93, RMSD 1.73 Å
- 5M47 chain A against the predicted model Q8NP73: TM-score 0.93, RMSD 1.73 Å
Elsewhere
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.