UniProt Q8DKM3
Photosystem II protein Y (Q8DKM3)
Photosystem II protein Y (UniProt Q8DKM3): 40 experimental structures and 1 predicted model on GenesisL1, 6 ligands bound, 7 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q8DKM3
- Protein
- Photosystem II protein Y
- Experimental structures
- 40
- Predicted models
- 1
- Ligands
- 6
- Pockets
- 7 · 7 records with a druggable one
Structures
41 records of Q8DKM3 in the MolNFT archive: 40 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4IL6 | Structure of Sr-substituted photosystem II | x-ray diffraction | R | — | — |
| 4IL6 | Structure of sr-substituted photosystem II | x-ray diffraction | R | — | — |
| 4PJ0 | Structure of T.elongatus Photosystem II, rows of dimers crystal packing | x-ray diffraction | R, r | — | — |
| 4PJ0 | Structure of T.ELONGATUS photosystem II, rows of dimers crystal packing | x-ray diffraction | R, r | — | — |
| 5KAF | RT XFEL structure of Photosystem II in the dark state at 3.0 A resolution | x-ray diffraction | R, r | SQD, HEM | — |
| 5KAF | Rt xfel structure of photosystem II in the dark state at 3.0 a resolution | x-ray diffraction | R, r | SQD, HEM | — |
| 5KAI | NH3-bound RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 2.8 A… | x-ray diffraction | R, r | SQD, HEM | — |
| 5KAI | NH3-bound rt xfel structure of photosystem II 500 ms after the 2ND illumination (2F) at 2.8 a… | x-ray diffraction | R, r | SQD, HEM | — |
| 5MX2 | Photosystem II depleted of the Mn4CaO5 cluster at 2.55 A resolution | x-ray diffraction | R, r | SQD, HEM | — |
| 5MX2 | Photosystem II depleted of the MN4CAO5 cluster at 2.55 a resolution | x-ray diffraction | R, r | SQD, HEM | — |
| 5TIS | Room temperature xfel structure of the native, doubly-illuminated photosystem II complex | x-ray diffraction | R, r | SQD, HEM | — |
| 6DHE | RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.05 Angstrom… | x-ray diffraction | R, r | SQD, UNL, HEM | — |
| 6DHF | RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.08 Angstrom resolution | x-ray diffraction | R, r | UNL, SQD, HEM | 1 (best 0.75) |
| 6DHG | RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.5 Angstrom… | x-ray diffraction | R, r | UNL, HEM, SQD | — |
| 6DHO | RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.07 Angstrom resolution | x-ray diffraction | R, r | HEM, UNL, SQD | — |
| 6DHP | RT XFEL structure of the three-flash state of Photosystem II (3F, S0-rich) at 2.04 Angstrom… | x-ray diffraction | R, r | UNL, SQD, HEM | — |
| 6W1O | RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.08 Angstrom… | x-ray diffraction | R, r | SQD, STE, HEC | — |
| 6W1P | RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom resolution | x-ray diffraction | R, r | HEC, STE, SQD | — |
| 6W1R | RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.23 Angstrom… | x-ray diffraction | R, r | HEC, SQD, STE | — |
| 6W1T | RT XFEL structure of Photosystem II 250 microseconds after the second illumination at 2.01 Angstrom… | x-ray diffraction | R, r | SQD, HEC, STE | 1 (best 0.77) |
| 6W1U | RT XFEL structure of Photosystem II 400 microseconds after the second illumination at 2.09 Angstrom… | x-ray diffraction | R, r | SQD, STE, HEC | — |
| 6W1V | RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.09 Angstrom resolution | x-ray diffraction | R, r | SQD, STE, HEC | — |
| 7RF1 | RT XFEL structure of Photosystem II averaged across all S-states at 1.89 Angstrom resolution | x-ray diffraction | R, r | STE, HEM | 1 (best 0.77) |
| 7RF5 | RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.23 Angstrom… | x-ray diffraction | R, r | HEM, STE | — |
| 7RF6 | RT XFEL structure of Photosystem II 250 microseconds after the second illumination at 2.01 Angstrom… | x-ray diffraction | R, r | STE, HEM | — |
| 7RF8 | RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.09 Angstrom resolution | x-ray diffraction | R, r | HEM, STE | 1 (best 0.76) |
| 7YQ2 | Crystal structure of photosystem II expressing psbA2 gene only | x-ray diffraction | R | DGD, UNL, SQD, HEM | — |
| 7YQ7 | Crystal structure of photosystem II expressing psbA3 gene only | x-ray diffraction | R | SQD, HEM | — |
| 8EZ5 | RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.09 Angstrom resolution | x-ray diffraction | R, r | HEM, STE, SQD | — |
| 8F4C | RT XFEL structure of the two-flash state of Photosystem II (2F, S3-rich) at 2.00 Angstrom resolution | x-ray diffraction | R, r | SQD, STE, HEM | — |
| 8F4D | RT XFEL structure of Photosystem II 50 microseconds after the third illumination at 2.15 Angstrom… | x-ray diffraction | R, r | SQD, HEM, STE | — |
| 8F4E | RT XFEL structure of Photosystem II 250 microseconds after the third illumination at 2.09 Angstrom… | x-ray diffraction | R, r | HEM, SQD, STE | — |
| 8F4F | RT XFEL structure of Photosystem II 500 microseconds after the third illumination at 2.03 Angstrom… | x-ray diffraction | R, r | SQD, HEM, STE | — |
| 8F4G | RT XFEL structure of Photosystem II 730 microseconds after the third illumination at 2.03 Angstrom… | x-ray diffraction | R, r | STE, HEM, SQD | 1 (best 0.76) |
| 8F4H | RT XFEL structure of Photosystem II 1200 microseconds after the third illumination at 2.10 Angstrom… | x-ray diffraction | R, r | HEM, SQD, STE | — |
| 8F4I | RT XFEL structure of Photosystem II 2000 microseconds after the third illumination at 2.00 Angstrom… | x-ray diffraction | R, r | SQD, STE, HEM | 1 (best 0.76) |
| 8F4J | RT XFEL structure of Photosystem II 4000 microseconds after the third illumination at 2.00 Angstrom… | x-ray diffraction | R, r | STE, HEM, SQD | — |
| 8F4K | RT XFEL structure of the three-flash state of Photosystem II (3F, S0-rich) at 2.16 Angstrom… | x-ray diffraction | R, r | SQD, STE, HEM | — |
| 8GN1 | Crystal structure of DBBQ-bound photosystem II complex | x-ray diffraction | R | DGD, SQD, HEM | — |
| 8GN2 | Crystal structure of PPBQ-bound photosystem II complex | x-ray diffraction | R | DGD, SQD, HEM | 1 (best 0.74) |
| Q8DKM3 | AlphaFold monomer V2.0 prediction for photosystem II protein Y (Q8DKM3) | predicted | A | — | — |
Ligands
Experiment against prediction
- 4IL6 chain R against the predicted model Q8DKM3: TM-score 0.95, RMSD 0.36 Å
- 4IL6 chain R against the predicted model Q8DKM3: TM-score 0.95, RMSD 0.36 Å
- 4PJ0 chain R against the predicted model Q8DKM3: TM-score 0.93, RMSD 0.43 Å
- 4PJ0 chain R against the predicted model Q8DKM3: TM-score 0.93, RMSD 0.43 Å
- 8GN2 chain R against the predicted model Q8DKM3: TM-score 0.92, RMSD 0.47 Å
- 4PJ0 chain r against the predicted model Q8DKM3: TM-score 0.92, RMSD 0.47 Å
- 4PJ0 chain r against the predicted model Q8DKM3: TM-score 0.92, RMSD 0.47 Å
- 5MX2 chain r against the predicted model Q8DKM3: TM-score 0.91, RMSD 0.45 Å
- 5MX2 chain r against the predicted model Q8DKM3: TM-score 0.91, RMSD 0.45 Å
- 5MX2 chain R against the predicted model Q8DKM3: TM-score 0.91, RMSD 0.58 Å
Elsewhere
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