UniProt Q8D8W6
50S ribosomal protein L25 (Q8D8W6)
50S ribosomal protein L25 (UniProt Q8D8W6): 2 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 8 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q8D8W6
- Protein
- 50S ribosomal protein L25
- Experimental structures
- 2
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 8 · 1 record with a druggable one
Structures
3 records of Q8D8W6 in the MolNFT archive: 2 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5IZN | The crystal structure of 50S ribosomal protein L25 from Vibrio vulnificus CMCP6 | x-ray diffraction | A, B, C, D, E, F, G, H | PO4 | 8 (best 0.82) |
| 5IZN | The crystal structure of 50S ribosomal protein L25 from vibrio vulnificus CMCP6 | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| Q8D8W6 | AlphaFold monomer V2.0 prediction for 50S ribosomal protein L25 (Q8D8W6) | predicted | A | — | — |
Ligands
- PO4 · Phosphate ion · in 1 record
Experiment against prediction
- 5IZN chain G against the predicted model Q8D8W6: TM-score 0.96, RMSD 0.59 Å
- 5IZN chain C against the predicted model Q8D8W6: TM-score 0.96, RMSD 0.61 Å
- 5IZN chain C against the predicted model Q8D8W6: TM-score 0.96, RMSD 0.61 Å
- 5IZN chain H against the predicted model Q8D8W6: TM-score 0.92, RMSD 1.11 Å
- 5IZN chain D against the predicted model Q8D8W6: TM-score 0.92, RMSD 1.19 Å
- 5IZN chain D against the predicted model Q8D8W6: TM-score 0.92, RMSD 1.19 Å
- 5IZN chain B against the predicted model Q8D8W6: TM-score 0.79, RMSD 1.38 Å
- 5IZN chain F against the predicted model Q8D8W6: TM-score 0.81, RMSD 1.90 Å
- 5IZN chain F against the predicted model Q8D8W6: TM-score 0.81, RMSD 1.90 Å
- 5IZN chain E against the predicted model Q8D8W6: TM-score 0.79, RMSD 1.45 Å
Elsewhere
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