UniProt Q72IN1
50S ribosomal protein L13 (Q72IN1)
50S ribosomal protein L13 (UniProt Q72IN1): 25 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 29 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q72IN1
- Protein
- 50S ribosomal protein L13
- Experimental structures
- 25
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 29 · 10 records with a druggable one
Structures
26 records of Q72IN1 in the MolNFT archive: 25 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4V4I | Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. | x-ray diffraction | H | — | — |
| 4V4J | Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. | x-ray diffraction | H | — | — |
| 4V63 | Structural basis for translation termination on the 70S ribosome. | x-ray diffraction | BN, DN | — | — |
| 4V67 | Crystal structure of a translation termination complex formed with release factor RF2. | x-ray diffraction | BN, DN | — | — |
| 4V7P | Recognition of the amber stop codon by release factor RF1. | x-ray diffraction | BJ, CJ | — | — |
| 4V83 | Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S… | x-ray diffraction | BJ, DJ | — | — |
| 4V84 | Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome. | x-ray diffraction | BJ, DJ | — | — |
| 4V9J | 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and… | x-ray diffraction | BN, DN | — | — |
| 4V9K | 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and… | x-ray diffraction | BN, DN | — | — |
| 4V9L | 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP… | x-ray diffraction | BN, DN | — | — |
| 4V9M | 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP… | x-ray diffraction | BN, DN | — | — |
| 4V9N | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | x-ray diffraction | BN, DN | — | — |
| 4V9Q | Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome. | x-ray diffraction | AJ, CJ | — | — |
| 4W29 | 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA… | x-ray diffraction | BN, DN | — | — |
| 4XEJ | IRES bound to bacterial Ribosome | x-ray diffraction | AL13, BL13 | — | 3 (best 0.89) |
| 4ZER | Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | x-ray diffraction | 1N, 2N | MG | 3 (best 0.90) |
| 5E81 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble… | x-ray diffraction | 58, 15 | MG | 3 (best 0.90) |
| 5J4D | E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon | x-ray diffraction | K, PB | MG | 3 (best 0.90) |
| 5V8I | Thermus thermophilus 70S ribosome lacking ribosomal protein uS17 | x-ray diffraction | 1N, 2N | MG | 4 (best 0.89) |
| 5VPP | The 70S P-site tRNA SufA6 complex | x-ray diffraction | RN, YN | MG | 2 (best 0.88) |
| 6B4V | Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome | x-ray diffraction | K, OB | MG | 4 (best 0.89) |
| 6BOH | Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the… | x-ray diffraction | K, PB | MG | 2 (best 0.89) |
| 6BOK | E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | x-ray diffraction | K, NB | MG | — |
| 6CFK | Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound… | x-ray diffraction | 1N, 2N | MG | 4 (best 0.89) |
| 6N1D | X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric… | x-ray diffraction | AL13, BL13 | MG | 1 (best 0.87) |
| Q72IN1 | AlphaFold monomer V2.0 prediction for 50S ribosomal protein L13 (Q72IN1) | predicted | A | — | — |
Ligands
- MG · Magnesium ion · in 10 records
Experiment against prediction
- 6CFK chain 2N against the predicted model Q72IN1: TM-score 0.99, RMSD 0.53 Å
- 6CFK chain 1N against the predicted model Q72IN1: TM-score 0.99, RMSD 0.53 Å
- 5V8I chain 1N against the predicted model Q72IN1: TM-score 0.99, RMSD 0.53 Å
- 4ZER chain 1N against the predicted model Q72IN1: TM-score 0.99, RMSD 0.54 Å
- 6BOK chain K against the predicted model Q72IN1: TM-score 0.99, RMSD 0.56 Å
- 4ZER chain 2N against the predicted model Q72IN1: TM-score 0.99, RMSD 0.55 Å
- 5V8I chain 2N against the predicted model Q72IN1: TM-score 0.99, RMSD 0.55 Å
- 5J4D chain K against the predicted model Q72IN1: TM-score 0.98, RMSD 0.56 Å
- 5J4D chain PB against the predicted model Q72IN1: TM-score 0.98, RMSD 0.56 Å
- 5VPP chain YN against the predicted model Q72IN1: TM-score 0.98, RMSD 0.64 Å
Elsewhere
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