UniProt Q72G84
50S ribosomal protein L28 (Q72G84)
50S ribosomal protein L28 (UniProt Q72G84): 19 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 1 pocket. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q72G84
- Protein
- 50S ribosomal protein L28
- Experimental structures
- 19
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 1 · 1 record with a druggable one
Structures
20 records of Q72G84 in the MolNFT archive: 19 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4V4I | Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. | x-ray diffraction | V | — | — |
| 4V4J | Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. | x-ray diffraction | V | — | — |
| 4V63 | Structural basis for translation termination on the 70S ribosome. | x-ray diffraction | B1, D1 | — | — |
| 4V67 | Crystal structure of a translation termination complex formed with release factor RF2. | x-ray diffraction | B1, D1 | — | — |
| 4V7P | Recognition of the amber stop codon by release factor RF1. | x-ray diffraction | BX, CX | — | — |
| 4V83 | Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S… | x-ray diffraction | BX, DX | — | — |
| 4V84 | Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome. | x-ray diffraction | BX, DX | — | — |
| 4V9J | 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and… | x-ray diffraction | B1, D1 | — | — |
| 4V9K | 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and… | x-ray diffraction | B1, D1 | — | — |
| 4V9L | 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP… | x-ray diffraction | B1, D1 | — | — |
| 4V9M | 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP… | x-ray diffraction | B1, D1 | — | — |
| 4V9N | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | x-ray diffraction | B1, D1 | — | — |
| 4V9Q | Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome. | x-ray diffraction | AX, CX | — | — |
| 4XEJ | IRES bound to bacterial Ribosome | x-ray diffraction | AL28, BL28 | — | 1 (best 0.87) |
| 5J4D | E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon | x-ray diffraction | Y, DC | MG | — |
| 6B4V | Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome | x-ray diffraction | Y, CC | MG | — |
| 6BOH | Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the… | x-ray diffraction | Y, DC | MG | — |
| 6BOK | E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | x-ray diffraction | Y, BC | MG | — |
| 6N1D | X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric… | x-ray diffraction | AL28, BL28 | MG | — |
| Q72G84 | AlphaFold monomer V2.0 prediction for 50S ribosomal protein L28 (Q72G84) | predicted | A | — | — |
Ligands
- MG · Magnesium ion · in 5 records
Experiment against prediction
- 5J4D chain DC against the predicted model Q72G84: TM-score 0.98, RMSD 0.77 Å
- 5J4D chain Y against the predicted model Q72G84: TM-score 0.98, RMSD 0.77 Å
- 6BOK chain Y against the predicted model Q72G84: TM-score 0.97, RMSD 0.79 Å
- 6BOH chain DC against the predicted model Q72G84: TM-score 0.97, RMSD 0.77 Å
- 6BOH chain Y against the predicted model Q72G84: TM-score 0.97, RMSD 0.77 Å
- 6B4V chain CC against the predicted model Q72G84: TM-score 0.97, RMSD 0.84 Å
- 6B4V chain Y against the predicted model Q72G84: TM-score 0.97, RMSD 0.84 Å
- 4V84 chain BX against the predicted model Q72G84: TM-score 0.94, RMSD 0.98 Å
- 4V83 chain BX against the predicted model Q72G84: TM-score 0.93, RMSD 1.03 Å
- 4V9Q chain AX against the predicted model Q72G84: TM-score 0.93, RMSD 1.05 Å
Elsewhere
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