UniProt Q5JJD0
DNA-directed RNA polymerase subunit K (Q5JJD0)
DNA-directed RNA polymerase subunit K (UniProt Q5JJD0), EC 2.7.7.6: 8 experimental structures and 1 predicted model on GenesisL1, 6 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q5JJD0
- Protein
- DNA-directed RNA polymerase subunit K
- EC
- 2.7.7.6
- Experimental structures
- 8
- Predicted models
- 1
- Pockets
- 6 · 3 records with a druggable one
Structures
9 records of Q5JJD0 in the MolNFT archive: 8 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4QIW | Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis | x-ray diffraction | K, T | — | — |
| 4QIW | Crystal structure of euryarchaeal RNA polymerase from thermococcus kodakarensis | x-ray diffraction | K, T | — | — |
| 6KF3 | Cryo-EM structure of Thermococcus kodakarensis RNA polymerase | electron microscopy | K | — | 2 (best 0.76) |
| 6KF3 | Cryo-EM structure of thermococcus kodakarensis RNA polymerase | electron microscopy | K | — | — |
| 6KF4 | Cryo-EM structure of Thermococcus kodakarensis RNA polymerase | electron microscopy | K | — | 2 (best 0.76) |
| 6KF4 | Cryo-EM structure of thermococcus kodakarensis RNA polymerase | electron microscopy | K | — | — |
| 6KF9 | Cryo-EM structure of Thermococcus kodakarensis RNA polymerase | electron microscopy | K | — | 2 (best 0.75) |
| 6KF9 | Cryo-EM structure of thermococcus kodakarensis RNA polymerase | electron microscopy | K | — | — |
| Q5JJD0 | AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit K (Q5JJD0) | predicted | A | — | — |
Experiment against prediction
- 4QIW chain K against the predicted model Q5JJD0: TM-score 0.90, RMSD 0.99 Å
- 4QIW chain K against the predicted model Q5JJD0: TM-score 0.90, RMSD 0.99 Å
- 6KF9 chain K against the predicted model Q5JJD0: TM-score 0.88, RMSD 1.05 Å
- 6KF9 chain K against the predicted model Q5JJD0: TM-score 0.88, RMSD 1.05 Å
- 6KF3 chain K against the predicted model Q5JJD0: TM-score 0.87, RMSD 1.09 Å
- 6KF3 chain K against the predicted model Q5JJD0: TM-score 0.87, RMSD 1.09 Å
- 6KF4 chain K against the predicted model Q5JJD0: TM-score 0.87, RMSD 1.07 Å
- 6KF4 chain K against the predicted model Q5JJD0: TM-score 0.87, RMSD 1.07 Å
Elsewhere
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