UniProt Q5JJC9
DNA-directed RNA polymerase subunit N (Q5JJC9)
DNA-directed RNA polymerase subunit N (UniProt Q5JJC9), EC 2.7.7.6: 10 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 8 pockets. Binding sites, druggability and experiment against prediction…
- UniProt
- Q5JJC9
- Protein
- DNA-directed RNA polymerase subunit N
- EC
- 2.7.7.6
- Experimental structures
- 10
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 8 · 4 records with a druggable one
Structures
11 records of Q5JJC9 in the MolNFT archive: 10 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4QIW | Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis | x-ray diffraction | N, V | ZN | 1 (best 0.77) |
| 4QIW | Crystal structure of euryarchaeal RNA polymerase from thermococcus kodakarensis | x-ray diffraction | N, V | — | — |
| 6KF3 | Cryo-EM structure of Thermococcus kodakarensis RNA polymerase | electron microscopy | N | ZN | 2 (best 0.70) |
| 6KF3 | Cryo-EM structure of thermococcus kodakarensis RNA polymerase | electron microscopy | N | ZN | — |
| 6KF4 | Cryo-EM structure of Thermococcus kodakarensis RNA polymerase | electron microscopy | N | ZN | 3 (best 0.76) |
| 6KF4 | Cryo-EM structure of thermococcus kodakarensis RNA polymerase | electron microscopy | N | ZN | — |
| 6KF9 | Cryo-EM structure of Thermococcus kodakarensis RNA polymerase | electron microscopy | N | ZN | 2 (best 0.74) |
| 6KF9 | Cryo-EM structure of thermococcus kodakarensis RNA polymerase | electron microscopy | N | ZN | — |
| 9BCT | Cryo-EM structure of Thermococcus kodakarensis FttA-dependent transcription pre-termination complex… | electron microscopy | N | ZN | — |
| 9BCU | Cryo-EM structure of Thermococcus kodakarensis FttA-dependent transcription pre-termination complex… | electron microscopy | N | ZN | — |
| Q5JJC9 | AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit N (Q5JJC9) | predicted | A | — | — |
Ligands
- ZN · Zinc ion · in 9 records
Experiment against prediction
- 9BCU chain N against the predicted model Q5JJC9: TM-score 0.96, RMSD 0.73 Å
- 9BCT chain N against the predicted model Q5JJC9: TM-score 0.96, RMSD 0.75 Å
- 4QIW chain N against the predicted model Q5JJC9: TM-score 0.92, RMSD 0.86 Å
- 4QIW chain N against the predicted model Q5JJC9: TM-score 0.92, RMSD 0.86 Å
- 6KF4 chain N against the predicted model Q5JJC9: TM-score 0.92, RMSD 0.91 Å
- 6KF4 chain N against the predicted model Q5JJC9: TM-score 0.92, RMSD 0.91 Å
- 6KF9 chain N against the predicted model Q5JJC9: TM-score 0.92, RMSD 0.93 Å
- 6KF9 chain N against the predicted model Q5JJC9: TM-score 0.92, RMSD 0.93 Å
- 6KF3 chain N against the predicted model Q5JJC9: TM-score 0.91, RMSD 1.02 Å
- 6KF3 chain N against the predicted model Q5JJC9: TM-score 0.91, RMSD 1.02 Å
Elsewhere
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