UniProt Q5JDM8

DNA-directed RNA polymerase subunit P (Q5JDM8)

DNA-directed RNA polymerase subunit P (UniProt Q5JDM8), EC 2.7.7.6: 6 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 1 pocket. Binding sites, druggability and experiment against prediction (TM-score)…

UniProt: Q5JDM8
Protein: DNA-directed RNA polymerase subunit P
EC: 2.7.7.6
Experimental structures: 6
Predicted models: 1
Ligands: 1
Pockets: 1 · 1 record with a druggable one

Structures

7 records of Q5JDM8 in the MolNFT archive: 6 experimental, 1 predicted.

Entry	Title	Method	Chains	Ligands	Pockets
4QIW	Crystal structure of euryarchaeal RNA polymerase from Thermococcus kodakarensis	x-ray diffraction	P, W	—	—
4QIW	Crystal structure of euryarchaeal RNA polymerase from thermococcus kodakarensis	x-ray diffraction	P, W	—	—
6KF3	Cryo-EM structure of thermococcus kodakarensis RNA polymerase	electron microscopy	P	ZN	—
6KF4	Cryo-EM structure of thermococcus kodakarensis RNA polymerase	electron microscopy	P	ZN	—
6KF9	Cryo-EM structure of thermococcus kodakarensis RNA polymerase	electron microscopy	P	ZN	—
9BCT	Cryo-EM structure of Thermococcus kodakarensis FttA-dependent transcription pre-termination complex…	electron microscopy	P	ZN	1 (best 0.76)
Q5JDM8	AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit P (Q5JDM8)	predicted	A	—	—

Ligands

ZN · Zinc ion · in 4 records

Experiment against prediction

9BCT chain P against the predicted model Q5JDM8: TM-score 0.80, RMSD 1.24 Å
6KF9 chain P against the predicted model Q5JDM8: TM-score 0.76, RMSD 1.33 Å
6KF3 chain P against the predicted model Q5JDM8: TM-score 0.73, RMSD 1.39 Å
6KF4 chain P against the predicted model Q5JDM8: TM-score 0.71, RMSD 1.49 Å
4QIW chain P against the predicted model Q5JDM8: TM-score 0.70, RMSD 1.60 Å
4QIW chain P against the predicted model Q5JDM8: TM-score 0.70, RMSD 1.60 Å

Elsewhere

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