UniProt Q45595
Putative peptide biosynthesis protein YydG (Q45595)
Putative peptide biosynthesis protein YydG (UniProt Q45595): 5 experimental structures and 1 predicted model on GenesisL1, 3 ligands bound, 37 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- Q45595
- Protein
- Putative peptide biosynthesis protein YydG
- Experimental structures
- 5
- Predicted models
- 1
- Ligands
- 3
- Pockets
- 37 · 6 records with a druggable one
Structures
6 records of Q45595 in the MolNFT archive: 5 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 8AI1 | Crystal structure of radical SAM epimerase EpeE from Bacillus subtilis with [4Fe-4S] clusters and… | x-ray diffraction | A, B | SF4, SAH | 4 (best 0.79) |
| 8AI2 | Crystal structure of radical SAM epimerase EpeE from Bacillus subtilis with [4Fe-4S] clusters… | x-ray diffraction | A, B | SF4, SAH | 9 (best 0.84) |
| 8AI3 | Crystal structure of radical SAM epimerase EpeE C223A mutant from Bacillus subtilis with [4Fe-4S]… | x-ray diffraction | A, B | SF4, SAM | 6 (best 0.78) |
| 8AI5 | Crystal structure of radical SAM epimerase EpeE C223A mutant from Bacillus subtilis with [4Fe-4S]… | x-ray diffraction | A, B | SF4, SAH | 10 (best 0.84) |
| 8AI6 | Crystal structure of radical SAM epimerase EpeE D210A mutant from Bacillus subtilis with [4Fe-4S]… | x-ray diffraction | A, B | SF4, SAH | 5 (best 0.79) |
| Q45595 | AlphaFold monomer V2.0 prediction for putative peptide biosynthesis protein yydg (Q45595) | predicted | A | — | 3 (best 0.73) |
Ligands
Experiment against prediction
- 8AI3 chain A against the predicted model Q45595: TM-score 0.99, RMSD 0.64 Å
- 8AI1 chain A against the predicted model Q45595: TM-score 0.99, RMSD 0.65 Å
- 8AI5 chain A against the predicted model Q45595: TM-score 0.99, RMSD 0.68 Å
- 8AI2 chain A against the predicted model Q45595: TM-score 0.99, RMSD 0.70 Å
- 8AI6 chain A against the predicted model Q45595: TM-score 0.97, RMSD 0.69 Å
- 8AI2 chain B against the predicted model Q45595: TM-score 0.97, RMSD 0.71 Å
- 8AI3 chain B against the predicted model Q45595: TM-score 0.97, RMSD 0.70 Å
- 8AI5 chain B against the predicted model Q45595: TM-score 0.97, RMSD 0.76 Å
- 8AI1 chain B against the predicted model Q45595: TM-score 0.97, RMSD 0.94 Å
- 8AI6 chain B against the predicted model Q45595: TM-score 0.96, RMSD 0.96 Å
Elsewhere
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