UniProt Q12508
E3 ubiquitin-protein ligase RMD5 (Q12508)
E3 ubiquitin-protein ligase RMD5 (UniProt Q12508), EC 2.3.2.27: 2 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 16 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- Q12508
- Protein
- E3 ubiquitin-protein ligase RMD5
- EC
- 2.3.2.27
- Experimental structures
- 2
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 16 · 1 record with a druggable one
Structures
3 records of Q12508 in the MolNFT archive: 2 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 7NS4 | Catalytic module of yeast chelator-gid SR4 E3 ubiquitin ligase | electron microscopy | b | ZN | — |
| 8PMQ | Catalytic module of yeast GID E3 ligase bound to multiphosphorylated Ubc8~ubiquitin | electron microscopy | 2 | ZN | 12 (best 0.70) |
| Q12508 | AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase RMD5 (Q12508) | predicted | A | — | 4 (best 0.40) |
Ligands
- ZN · Zinc ion · in 2 records
Experiment against prediction
- 8PMQ chain 2 against the predicted model Q12508: TM-score 0.57, RMSD 3.45 Å
- 7NS4 chain b against the predicted model Q12508: TM-score 0.56, RMSD 4.00 Å
Elsewhere
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