UniProt Q08004
Bud site selection protein 20 (Q08004)
Bud site selection protein 20 (UniProt Q08004): 16 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 27 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q08004
- Protein
- Bud site selection protein 20
- Experimental structures
- 16
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 27 · 15 records with a druggable one
Structures
17 records of Q08004 in the MolNFT archive: 16 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3JCT | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | electron microscopy | I | ZN | 2 (best 0.88) |
| 6FT6 | Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors | electron microscopy | I | ZN | 3 (best 0.87) |
| 6M62 | Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta… | electron microscopy | I | ZN | 1 (best 0.90) |
| 6N8J | Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit | electron microscopy | I | — | 1 (best 0.88) |
| 6N8K | Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit | electron microscopy | I | — | 1 (best 0.88) |
| 6N8L | Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit | electron microscopy | I | — | 2 (best 0.87) |
| 6YLG | Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement) | electron microscopy | I | ZN | 2 (best 0.88) |
| 6YLH | Rix1-Rea1 pre-60S particle - full composite structure | electron microscopy | I | ZN | 2 (best 0.88) |
| 6YLY | pre-60S State NE2 (TAP-Flag-Nop53) | electron microscopy | I | — | — |
| 7UG6 | Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922 | electron microscopy | I | — | 1 (best 0.85) |
| 7UOO | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state | electron microscopy | I | ZN | 1 (best 0.90) |
| 7UQB | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A… | electron microscopy | I | ZN | 2 (best 0.87) |
| 7UQZ | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain | electron microscopy | I | ZN | 2 (best 0.89) |
| 7V08 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A… | electron microscopy | I | ZN | 1 (best 0.89) |
| 7Z34 | Structure of pre-60S particle bound to DRG1(AFG2). | electron microscopy | I | — | 3 (best 0.87) |
| 8HFR | NPC-trapped pre-60S particle | electron microscopy | ox | — | 3 (best 0.89) |
| Q08004 | AlphaFold monomer V2.0 prediction for bud site selection protein 20 (Q08004) | predicted | A | — | — |
Ligands
- ZN · Zinc ion · in 9 records
Experiment against prediction
- 7UOO chain I against the predicted model Q08004: TM-score 0.96, RMSD 0.86 Å
- 7V08 chain I against the predicted model Q08004: TM-score 0.96, RMSD 0.88 Å
- 7UQZ chain I against the predicted model Q08004: TM-score 0.96, RMSD 0.90 Å
- 3JCT chain I against the predicted model Q08004: TM-score 0.96, RMSD 0.90 Å
- 7UQB chain I against the predicted model Q08004: TM-score 0.96, RMSD 0.90 Å
- 6YLG chain I against the predicted model Q08004: TM-score 0.96, RMSD 0.91 Å
- 6YLH chain I against the predicted model Q08004: TM-score 0.96, RMSD 0.91 Å
- 6N8K chain I against the predicted model Q08004: TM-score 0.95, RMSD 1.04 Å
- 6FT6 chain I against the predicted model Q08004: TM-score 0.95, RMSD 1.00 Å
- 6N8J chain I against the predicted model Q08004: TM-score 0.95, RMSD 1.05 Å
Elsewhere
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