UniProt Q05783
High mobility group protein D (Q05783)
High mobility group protein D (UniProt Q05783): 8 experimental structures and 1 predicted model on GenesisL1. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q05783
- Protein
- High mobility group protein D
- Experimental structures
- 8
- Predicted models
- 1
Structures
9 records of Q05783 in the MolNFT archive: 8 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1E7J | Hmg-D complexed to a bulge DNA | solution nmr | A | — | — |
| 1HMA | The solution structure and dynamics of the DNA binding domain of hmg-D from drosophila melanogaster | solution nmr | A | — | — |
| 1HMA | The solution structure and dynamics of the DNA binding domain of hmg-D from drosophila melanogaster | solution nmr | A | — | — |
| 1QRV | Crystal structure of the complex of hmg-D and DNA | x-ray diffraction | A, B | — | — |
| 1QRV | Crystal structure of the complex of hmg-D and DNA | x-ray diffraction | A, B | — | — |
| 3NM9 | HMGD(M13A)-DNA complex | x-ray diffraction | A, D, G, J, M, P | — | — |
| 3NM9 | HMGD(M13A)-DNA complex | x-ray diffraction | A, D, G, J, M, P | — | — |
| 8R1X | Solution structure and chemical shift assignments for HMG-D Y12F mutant complexed to a 14:12 dA2… | solution nmr | A | — | — |
| Q05783 | AlphaFold monomer V2.0 prediction for high mobility group protein D (Q05783) | predicted | A | — | — |
Experiment against prediction
- 1QRV chain B against the predicted model Q05783: TM-score 0.92, RMSD 0.90 Å
- 1QRV chain B against the predicted model Q05783: TM-score 0.92, RMSD 0.90 Å
- 3NM9 chain A against the predicted model Q05783: TM-score 0.90, RMSD 1.06 Å
- 3NM9 chain A against the predicted model Q05783: TM-score 0.90, RMSD 1.06 Å
- 1QRV chain A against the predicted model Q05783: TM-score 0.88, RMSD 1.18 Å
- 1QRV chain A against the predicted model Q05783: TM-score 0.88, RMSD 1.18 Å
- 8R1X chain A against the predicted model Q05783: TM-score 0.87, RMSD 1.40 Å
- 1E7J chain A against the predicted model Q05783: TM-score 0.70, RMSD 2.49 Å
- 1HMA chain A against the predicted model Q05783: TM-score 0.64, RMSD 2.78 Å
- 1HMA chain A against the predicted model Q05783: TM-score 0.64, RMSD 2.78 Å
Elsewhere
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