UniProt Q04641
Outer membrane protein MxiD (Q04641)
Outer membrane protein MxiD (UniProt Q04641): 6 experimental structures and 1 predicted model on GenesisL1, 26 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- Q04641
- Protein
- Outer membrane protein MxiD
- Experimental structures
- 6
- Predicted models
- 1
- Pockets
- 26 · 2 records with a druggable one
Structures
7 records of Q04641 in the MolNFT archive: 6 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2JW1 | Structural characterization of the type III pilotin-secretin interaction in Shigella flexneri by… | solution nmr | B | — | — |
| 2JW1 | Structural characterization of the type III pilotin-secretin interaction in shigella flexneri by… | solution nmr | B | — | — |
| 6RWK | MxiD N0 N1 and MxiG C-terminal domains of the Shigella type 3 secretion system | electron microscopy | X, Y, Z, 0, 2, 4, 6, 8, x, y, z, 1, 3, 5, 7, 9 | — | 20 (best 0.57) |
| 6RWK | Mxid N0 N1 and mxig C-terminal domains of the shigella type 3 secretion system | electron microscopy | X, Y, Z, 0, 2, 4, 6, 8, x, y, z, 1, 3, 5, 7, 9 | — | — |
| 8AXK | Type 3 secretion system export apparatus core, inner rod and needle of Shigella flexneri | electron microscopy | X, Y, Z, 0, 2, 4, 6, 8, x, y, z, 1, 3, 5, 7, 9 | — | — |
| 8AXN | Inner membrane ring and secretin N0 N1 domains of the type 3 secretion system of Shigella flexneri | electron microscopy | 0, 1, a0, Y, Z, 2, 4, 6, 8, b0, y, z, 3, 5, 7, 9 | — | 4 (best 0.80) |
| Q04641 | AlphaFold monomer V2.0 prediction for type 3 secretion system secretin (Q04641) | predicted | A | — | 2 (best 0.39) |
Experiment against prediction
- 8AXK chain 8 against the predicted model Q04641: TM-score 0.96, RMSD 0.57 Å
- 8AXK chain 1 against the predicted model Q04641: TM-score 0.96, RMSD 0.60 Å
- 8AXK chain 7 against the predicted model Q04641: TM-score 0.96, RMSD 0.61 Å
- 8AXK chain 6 against the predicted model Q04641: TM-score 0.96, RMSD 0.61 Å
- 8AXK chain 4 against the predicted model Q04641: TM-score 0.96, RMSD 0.62 Å
- 8AXK chain y against the predicted model Q04641: TM-score 0.95, RMSD 0.61 Å
- 8AXK chain Y against the predicted model Q04641: TM-score 0.95, RMSD 0.62 Å
- 8AXK chain 3 against the predicted model Q04641: TM-score 0.95, RMSD 0.63 Å
- 8AXK chain x against the predicted model Q04641: TM-score 0.95, RMSD 0.62 Å
- 8AXK chain z against the predicted model Q04641: TM-score 0.95, RMSD 0.63 Å
Elsewhere
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