UniProt P76318
Abasic site processing protein YedK (P76318)
Abasic site processing protein YedK (UniProt P76318), EC 3.4.-.-: 7 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 5 pockets. Binding sites, druggability and experiment against prediction (TM-score)…
- UniProt
- P76318
- Protein
- Abasic site processing protein YedK
- EC
- 3.4.-.-
- Experimental structures
- 7
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 5 · 2 records with a druggable one
Structures
8 records of P76318 in the MolNFT archive: 7 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2ICU | Crystal Structure of Hypothetical Protein YedK From Escherichia coli | x-ray diffraction | A, B | — | — |
| 2ICU | Crystal structure of hypothetical protein yedk from escherichia COLI | x-ray diffraction | A, B | — | — |
| 6NUA | DNA-protein crosslink between E. coli YedK and ssDNA containing an abasic site | x-ray diffraction | A, B | — | 2 (best 0.80) |
| 6NUA | DNA-protein crosslink between E. COLI yedk and ssdna containing an abasic site | x-ray diffraction | A, B | — | — |
| 6NUH | Non-covalent DNA-protein complex between E. coli YedK and ssDNA containing an abasic site analog | x-ray diffraction | A | — | 1 (best 0.34) |
| 6NUH | Non-covalent DNA-protein complex between E. COLI yedk and ssdna containing an abasic site analog | x-ray diffraction | A | PDI | — |
| 8D2M | Covalent Schiff base complex of YedK C2A and abasic DNA | x-ray diffraction | A, B | — | 2 (best 0.80) |
| P76318 | AlphaFold monomer V2.0 prediction for abasic site processing protein yedk (P76318) | predicted | A | — | — |
Ligands
- PDI · Phosphoric acid mono-(3-hydroxy-propyl) ester · in 1 record
Experiment against prediction
- 2ICU chain A against the predicted model P76318: TM-score 0.99, RMSD 0.80 Å
- 2ICU chain A against the predicted model P76318: TM-score 0.99, RMSD 0.80 Å
- 2ICU chain B against the predicted model P76318: TM-score 0.98, RMSD 0.88 Å
- 2ICU chain B against the predicted model P76318: TM-score 0.98, RMSD 0.88 Å
- 6NUH chain A against the predicted model P76318: TM-score 0.96, RMSD 0.87 Å
- 6NUH chain A against the predicted model P76318: TM-score 0.96, RMSD 0.87 Å
- 8D2M chain A against the predicted model P76318: TM-score 0.96, RMSD 1.01 Å
- 6NUA chain B against the predicted model P76318: TM-score 0.95, RMSD 1.12 Å
- 6NUA chain A against the predicted model P76318: TM-score 0.95, RMSD 1.12 Å
- 6NUA chain A against the predicted model P76318: TM-score 0.95, RMSD 1.12 Å
Elsewhere
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