UniProt P75178
50S ribosomal protein L13 (P75178)
50S ribosomal protein L13 (UniProt P75178): 34 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 44 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P75178
- Protein
- 50S ribosomal protein L13
- Experimental structures
- 34
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 44 · 25 records with a druggable one
Structures
35 records of P75178 in the MolNFT archive: 34 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 7OOD | Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells | electron microscopy | i | — | 2 (best 0.84) |
| 7OOD | Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol- treated cells | electron microscopy | i | — | — |
| 7P6Z | Mycoplasma pneumoniae 70S ribosome in untreated cells | electron microscopy | i | — | — |
| 7PAH | 70S ribosome with P- and E-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | i | — | 3 (best 0.88) |
| 7PAI | 70S ribosome with P-site tRNA in Mycoplasma pneumoniae cells | electron microscopy | i | — | 2 (best 0.84) |
| 7PAJ | 70S ribosome with EF-Tu-tRNA, P- and E-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | i | — | 1 (best 0.86) |
| 7PAK | 70S ribosome with EF-Tu-tRNA and P-site tRNA in Mycoplasma pneumoniae cells | electron microscopy | i | — | — |
| 7PAM | 70S ribosome with A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | i | — | — |
| 7PAN | 70S ribosome with A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | i | — | 2 (best 0.86) |
| 7PAO | 70S ribosome with EF-G, A*- and P/E-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | i | — | — |
| 7PAQ | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | i | — | 3 (best 0.85) |
| 7PAR | 70S ribosome with EF-G, ap/P- and pe/E-site tRNAs in Mycoplasma pneumoniae cells | electron microscopy | i | — | 3 (best 0.87) |
| 7PAT | Free 50S in untreated mycoplasma pneumoniae cells | electron microscopy | i | — | — |
| 7PAU | free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells | electron microscopy | i | — | 2 (best 0.88) |
| 7PAU | Free 50S in complex with ribosome recycling factor in untreated mycoplasma pneumoniae cells | electron microscopy | i | — | — |
| 7PH9 | 70S ribosome with P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells | electron microscopy | i | — | 1 (best 0.87) |
| 7PHA | 70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells | electron microscopy | i | — | 3 (best 0.88) |
| 7PHB | 70S ribosome with A- and P-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells | electron microscopy | i | — | 1 (best 0.86) |
| 7PHC | 70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells | electron microscopy | i | — | 2 (best 0.84) |
| 7PI8 | 70S ribosome with P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | electron microscopy | i | — | 1 (best 0.89) |
| 7PI9 | 70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | electron microscopy | i | — | 1 (best 0.88) |
| 7PIA | 70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells | electron microscopy | i | — | — |
| 7PIB | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells | electron microscopy | i | — | 1 (best 0.87) |
| 7PIC | 70S ribosome with P/E-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells | electron microscopy | i | — | 1 (best 0.89) |
| 7PIO | 70S ribosome with P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells | electron microscopy | i | — | 1 (best 0.89) |
| 7PIP | 70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells | electron microscopy | i | — | 2 (best 0.89) |
| 7PIQ | 70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | electron microscopy | i | — | 1 (best 0.84) |
| 7PIR | 70S ribosome with A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells | electron microscopy | i | — | 2 (best 0.85) |
| 7PIS | 70S ribosome with EF-G, A*- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae… | electron microscopy | i | — | 1 (best 0.86) |
| 7PIT | 70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae… | electron microscopy | i | — | 3 (best 0.86) |
| 8P7Y | Mycoplasma pneumoniae 70S ribosome with second S4 protein on large subunit | electron microscopy | i | MG | — |
| 8P8B | Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells | electron microscopy | i | MG | 3 (best 0.80) |
| 8P8V | Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S) | electron microscopy | i | MG | 1 (best 0.86) |
| 8P8W | Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S) | electron microscopy | i | MG | 1 (best 0.88) |
| P75178 | AlphaFold monomer V2.0 prediction for 50S ribosomal protein L13 (P75178) | predicted | A | — | — |
Ligands
- MG · Magnesium ion · in 4 records
Experiment against prediction
- 8P8B chain i against the predicted model P75178: TM-score 0.96, RMSD 1.04 Å
- 7OOD chain i against the predicted model P75178: TM-score 0.96, RMSD 1.05 Å
- 7OOD chain i against the predicted model P75178: TM-score 0.96, RMSD 1.05 Å
- 8P8V chain i against the predicted model P75178: TM-score 0.96, RMSD 1.06 Å
- 7P6Z chain i against the predicted model P75178: TM-score 0.96, RMSD 1.08 Å
- 8P7Y chain i against the predicted model P75178: TM-score 0.96, RMSD 1.07 Å
- 8P8W chain i against the predicted model P75178: TM-score 0.96, RMSD 1.07 Å
- 7PHB chain i against the predicted model P75178: TM-score 0.94, RMSD 1.19 Å
- 7PIT chain i against the predicted model P75178: TM-score 0.94, RMSD 1.28 Å
- 7PIB chain i against the predicted model P75178: TM-score 0.93, RMSD 1.29 Å
Elsewhere
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