UniProt P62669

30S ribosomal protein S9 (P62669)

30S ribosomal protein S9 (UniProt P62669): 52 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 5 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.

UniProt: P62669
Protein: 30S ribosomal protein S9
Experimental structures: 52
Predicted models: 1
Ligands: 1
Pockets: 5 · 4 records with a druggable one

Structures

53 records of P62669 in the MolNFT archive: 52 experimental, 1 predicted.

Entry	Title	Method	Chains	Ligands	Pockets
2E5L	A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction	x-ray diffraction	I	—	—
2E5L	A snapshot of the 30S ribosomal subunit capturing mRNA via the shine- dalgarno interaction	x-ray diffraction	I	—	—
2F4V	30S ribosome + designer antibiotic	x-ray diffraction	I	—	—
2F4V	30S ribosome + designer antibiotic	x-ray diffraction	I	—	—
2R1G	Coordinates of the thermus thermophilus 30S components neighboring RbfA as obtained by fitting into…	electron microscopy	G	—	—
2R1G	Coordinates of the thermus thermophilus 30S components neighboring rbfa as obtained by fitting into…	electron microscopy	G	—	—
2UUA	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U…	x-ray diffraction	I	—	—
2UUA	Structure of the thermus thermophilus 30S ribosomal subunit complexed with a valine-asl with CMO5U…	x-ray diffraction	I	—	—
2VQE	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon…	x-ray diffraction	I	—	—
2VQE	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon…	x-ray diffraction	I	—	—
2VQF	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon…	x-ray diffraction	I	—	—
2VQF	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon…	x-ray diffraction	I	—	—
2ZM6	Crystal structure of the Thermus thermophilus 30S ribosomal subunit	x-ray diffraction	I	—	—
2ZM6	Crystal structure of the thermus thermophilus 30S ribosomal subunit	x-ray diffraction	I	—	—
3T1H	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem…	x-ray diffraction	I	—	—
3T1H	Structure of the thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem…	x-ray diffraction	I	—	—
3T1Y	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem…	x-ray diffraction	I	—	—
3T1Y	Structure of the thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem…	x-ray diffraction	I	—	—
4KVB	Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17	x-ray diffraction	I	—	—
4KVB	Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17	x-ray diffraction	I	—	—
4V4I	Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.	x-ray diffraction	j	—	—
4V4J	Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.	x-ray diffraction	j	—	—
4V4R	Crystal structure of the whole ribosomal complex.	x-ray diffraction	AI	—	—
4V4S	Crystal structure of the whole ribosomal complex.	x-ray diffraction	AI	—	—
4V4T	Crystal structure of the whole ribosomal complex with a stop codon in the A-site.	x-ray diffraction	AI	—	—
4V51	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	x-ray diffraction	AI, CI	—	—
4V5A	Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with…	x-ray diffraction	AI, CI	—	—
4V5C	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated…	x-ray diffraction	AI, CI	—	—
4V5D	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A…	x-ray diffraction	AI, CI	—	—
4V5E	Insights into translational termination from the structure of RF2 bound to the ribosome	x-ray diffraction	AI, CI	—	—
4V5J	Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights…	x-ray diffraction	AI, CI	—	—
4V5K	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	x-ray diffraction	AI	—	—
4V5L	The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog	x-ray diffraction	AI	—	—
4V63	Structural basis for translation termination on the 70S ribosome.	x-ray diffraction	AI, CI	—	—
4V67	Crystal structure of a translation termination complex formed with release factor RF2.	x-ray diffraction	AI, CI	—	—
4V68	T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex…	electron microscopy	AI	—	—
4V7P	Recognition of the amber stop codon by release factor RF1.	x-ray diffraction	AI, DI	—	—
4V83	Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S…	x-ray diffraction	AI, CI	—	—
4V84	Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.	x-ray diffraction	AI, CI	—	—
4V9J	70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and…	x-ray diffraction	AI, CI	—	—
4V9K	70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and…	x-ray diffraction	AI, CI	—	—
4V9L	70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP…	x-ray diffraction	AI, CI	—	—
4V9M	70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP…	x-ray diffraction	AI, CI	—	—
4V9N	Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.	x-ray diffraction	AI, CI	—	—
4V9Q	Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.	x-ray diffraction	BI, DI	—	—
4XEJ	IRES bound to bacterial Ribosome	x-ray diffraction	AS09, BS09	—	1 (best 0.87)
5J4D	E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon	x-ray diffraction	RA, WC	MG	—
5V8I	Thermus thermophilus 70S ribosome lacking ribosomal protein uS17	x-ray diffraction	1i, 2i	MG	—
6B4V	Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome	x-ray diffraction	RA, VC	MG	1 (best 0.86)
6BOH	Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the…	x-ray diffraction	SA, XC	MG	2 (best 0.89)
6BOK	E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	x-ray diffraction	QA, TC	MG	—
6N1D	X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric…	x-ray diffraction	AS09, BS09	MG	1 (best 0.86)
P62669	AlphaFold monomer V2.0 prediction for 30S ribosomal protein S9 (P62669)	predicted	A	—	—

Ligands

MG · Magnesium ion · in 6 records

Experiment against prediction

5V8I chain 1i against the predicted model P62669: TM-score 0.98, RMSD 0.57 Å
2VQF chain I against the predicted model P62669: TM-score 0.98, RMSD 0.56 Å
2VQF chain I against the predicted model P62669: TM-score 0.98, RMSD 0.56 Å
2UUA chain I against the predicted model P62669: TM-score 0.98, RMSD 0.57 Å
2UUA chain I against the predicted model P62669: TM-score 0.98, RMSD 0.57 Å
5V8I chain 2i against the predicted model P62669: TM-score 0.98, RMSD 0.56 Å
2VQE chain I against the predicted model P62669: TM-score 0.98, RMSD 0.64 Å
2VQE chain I against the predicted model P62669: TM-score 0.98, RMSD 0.64 Å
3T1Y chain I against the predicted model P62669: TM-score 0.98, RMSD 0.77 Å
3T1Y chain I against the predicted model P62669: TM-score 0.98, RMSD 0.77 Å

Elsewhere

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