UniProt P62662
30S ribosomal protein S2 (P62662)
30S ribosomal protein S2 (UniProt P62662): 29 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 10 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P62662
- Protein
- 30S ribosomal protein S2
- Experimental structures
- 29
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 10 · 7 records with a druggable one
Structures
30 records of P62662 in the MolNFT archive: 29 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4KVB | Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17 | x-ray diffraction | B | MG | 2 (best 0.83) |
| 4KVB | Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17 | x-ray diffraction | B | MG | 2 (best 0.83) |
| 4V4I | Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. | x-ray diffraction | c | — | 1 (best 0.86) |
| 4V4J | Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. | x-ray diffraction | c | — | — |
| 4V63 | Structural basis for translation termination on the 70S ribosome. | x-ray diffraction | AB, CB | MG | — |
| 4V67 | Crystal structure of a translation termination complex formed with release factor RF2. | x-ray diffraction | AB, CB | MG | — |
| 4V7P | Recognition of the amber stop codon by release factor RF1. | x-ray diffraction | AB, DB | — | — |
| 4V83 | Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S… | x-ray diffraction | AB, CB | MG | — |
| 4V84 | Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome. | x-ray diffraction | AB, CB | — | — |
| 4V9J | 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and… | x-ray diffraction | AB, CB | — | — |
| 4V9K | 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and… | x-ray diffraction | AB, CB | — | — |
| 4V9L | 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP… | x-ray diffraction | AB, CB | — | 1 (best 0.86) |
| 4V9M | 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP… | x-ray diffraction | AB, CB | — | 1 (best 0.86) |
| 4V9N | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | x-ray diffraction | AB, CB | MG | — |
| 4V9Q | Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome. | x-ray diffraction | BB, DB | MG | — |
| 4W29 | 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA… | x-ray diffraction | AB, CB | — | — |
| 4XEJ | IRES bound to bacterial Ribosome | x-ray diffraction | AS02, BS02 | — | — |
| 4ZER | Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | x-ray diffraction | 1b, 2b | MG | — |
| 5E81 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble… | x-ray diffraction | 1E, 12 | — | — |
| 5J4D | E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon | x-ray diffraction | KA, PC | MG | — |
| 5V8I | Thermus thermophilus 70S ribosome lacking ribosomal protein uS17 | x-ray diffraction | 1b, 2b | MG | — |
| 6B4V | Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome | x-ray diffraction | KA, OC | MG | 1 (best 0.86) |
| 6BOH | Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the… | x-ray diffraction | LA, QC | MG | — |
| 6BOK | E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | x-ray diffraction | JA, MC | MG | — |
| 6C5L | Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination… | x-ray diffraction | AB, CB | — | — |
| 6CFJ | Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound… | x-ray diffraction | 1b, 2b | MG | — |
| 6CFK | Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound… | x-ray diffraction | 1b, 2b | MG | — |
| 6CFL | Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to… | x-ray diffraction | 1b, 2b | MG | — |
| 6N1D | X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric… | x-ray diffraction | AS02, BS02 | MG | 1 (best 0.86) |
| P62662 | AlphaFold monomer V2.0 prediction for 30S ribosomal protein S2 (P62662) | predicted | A | — | 1 (best 0.30) |
Ligands
- MG · Magnesium ion · in 17 records
Experiment against prediction
- 4KVB chain B against the predicted model P62662: TM-score 0.97, RMSD 0.96 Å
- 4KVB chain B against the predicted model P62662: TM-score 0.97, RMSD 0.96 Å
- 6CFL chain 1b against the predicted model P62662: TM-score 0.97, RMSD 1.08 Å
- 5V8I chain 1b against the predicted model P62662: TM-score 0.97, RMSD 1.12 Å
- 6CFK chain 1b against the predicted model P62662: TM-score 0.97, RMSD 1.11 Å
- 4ZER chain 1b against the predicted model P62662: TM-score 0.97, RMSD 1.11 Å
- 6CFJ chain 1b against the predicted model P62662: TM-score 0.97, RMSD 1.10 Å
- 4V9Q chain BB against the predicted model P62662: TM-score 0.96, RMSD 1.20 Å
- 4V67 chain AB against the predicted model P62662: TM-score 0.96, RMSD 1.25 Å
- 4V9N chain AB against the predicted model P62662: TM-score 0.96, RMSD 1.25 Å
Elsewhere
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