UniProt P62653
30S ribosomal protein S10 (P62653)
30S ribosomal protein S10 (UniProt P62653): 27 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 24 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P62653
- Protein
- 30S ribosomal protein S10
- Experimental structures
- 27
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 24 · 14 records with a druggable one
Structures
28 records of P62653 in the MolNFT archive: 27 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4KVB | Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17 | x-ray diffraction | J | — | 4 (best 0.89) |
| 4KVB | Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17 | x-ray diffraction | J | — | 4 (best 0.89) |
| 4V4I | Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. | x-ray diffraction | k | — | 1 (best 0.86) |
| 4V4J | Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. | x-ray diffraction | k | — | 1 (best 0.85) |
| 4V63 | Structural basis for translation termination on the 70S ribosome. | x-ray diffraction | AJ, CJ | MG | 2 (best 0.87) |
| 4V67 | Crystal structure of a translation termination complex formed with release factor RF2. | x-ray diffraction | AJ, CJ | MG | 1 (best 0.86) |
| 4V7P | Recognition of the amber stop codon by release factor RF1. | x-ray diffraction | AJ, DJ | MG | — |
| 4V83 | Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S… | x-ray diffraction | AJ, CJ | MG | 2 (best 0.86) |
| 4V84 | Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome. | x-ray diffraction | AJ, CJ | MG | — |
| 4V9J | 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and… | x-ray diffraction | AJ, CJ | — | 1 (best 0.85) |
| 4V9K | 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and… | x-ray diffraction | AJ, CJ | — | — |
| 4V9L | 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP… | x-ray diffraction | AJ, CJ | — | — |
| 4V9M | 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP… | x-ray diffraction | AJ, CJ | — | — |
| 4V9N | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | x-ray diffraction | AJ, CJ | MG | — |
| 4V9Q | Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome. | x-ray diffraction | BJ, DJ | MG | — |
| 4W29 | 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA… | x-ray diffraction | AJ, CJ | — | — |
| 4WQ1 | Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the… | x-ray diffraction | 1I, 1A | MG | 1 (best 0.88) |
| 4XEJ | IRES bound to bacterial Ribosome | x-ray diffraction | AS10, BS10 | — | — |
| 4ZER | Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | x-ray diffraction | 1j, 2j | MG | — |
| 5D8B | Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch | x-ray diffraction | KA, GC | MG | — |
| 5E81 | Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble… | x-ray diffraction | 1I, 1A | MG | 2 (best 0.89) |
| 5J4D | E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon | x-ray diffraction | SA, XC | MG | 1 (best 0.88) |
| 5V8I | Thermus thermophilus 70S ribosome lacking ribosomal protein uS17 | x-ray diffraction | 1j, 2j | MG | — |
| 6B4V | Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome | x-ray diffraction | SA, WC | MG | — |
| 6BOH | Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the… | x-ray diffraction | TA, YC | MG | 1 (best 0.87) |
| 6BOK | E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | x-ray diffraction | RA, UC | MG | 2 (best 0.88) |
| 6N1D | X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric… | x-ray diffraction | AS10, BS10 | — | 1 (best 0.86) |
| P62653 | AlphaFold monomer V2.0 prediction for 30S ribosomal protein S10 (P62653) | predicted | A | — | — |
Ligands
- MG · Magnesium ion · in 16 records
Experiment against prediction
- 5V8I chain 1j against the predicted model P62653: TM-score 0.95, RMSD 0.87 Å
- 5V8I chain 2j against the predicted model P62653: TM-score 0.95, RMSD 0.87 Å
- 4ZER chain 2j against the predicted model P62653: TM-score 0.94, RMSD 0.89 Å
- 4ZER chain 1j against the predicted model P62653: TM-score 0.94, RMSD 0.90 Å
- 4WQ1 chain 1A against the predicted model P62653: TM-score 0.94, RMSD 1.01 Å
- 4WQ1 chain 1I against the predicted model P62653: TM-score 0.93, RMSD 1.05 Å
- 4V67 chain AJ against the predicted model P62653: TM-score 0.93, RMSD 1.07 Å
- 4XEJ chain AS10 against the predicted model P62653: TM-score 0.92, RMSD 1.08 Å
- 5D8B chain KA against the predicted model P62653: TM-score 0.92, RMSD 1.09 Å
- 5D8B chain GC against the predicted model P62653: TM-score 0.92, RMSD 1.09 Å
Elsewhere
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