UniProt P62613
30S ribosomal protein Thx (P62613)
30S ribosomal protein Thx (UniProt P62613): 19 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 33 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P62613
- Protein
- 30S ribosomal protein Thx
- Experimental structures
- 19
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 33 · 16 records with a druggable one
Structures
20 records of P62613 in the MolNFT archive: 19 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4KVB | Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17 | x-ray diffraction | U | MG | 2 (best 0.89) |
| 4KVB | Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17 | x-ray diffraction | U | MG | 2 (best 0.89) |
| 4V4I | Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. | x-ray diffraction | v | — | — |
| 4V4J | Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. | x-ray diffraction | v | — | 1 (best 0.87) |
| 4V63 | Structural basis for translation termination on the 70S ribosome. | x-ray diffraction | AU, CU | MG | 1 (best 0.87) |
| 4V67 | Crystal structure of a translation termination complex formed with release factor RF2. | x-ray diffraction | AU, CU | MG | 2 (best 0.88) |
| 4V7P | Recognition of the amber stop codon by release factor RF1. | x-ray diffraction | AU, DU | — | 2 (best 0.88) |
| 4V83 | Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S… | x-ray diffraction | AU, CU | MG | 3 (best 0.88) |
| 4V84 | Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome. | x-ray diffraction | AU, CU | — | 2 (best 0.88) |
| 4V9N | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | x-ray diffraction | AU, CU | MG | 1 (best 0.86) |
| 4V9Q | Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome. | x-ray diffraction | BU, DU | MG | 2 (best 0.88) |
| 4WQ1 | Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the… | x-ray diffraction | 1F, 1B | MG | 1 (best 0.88) |
| 4XEJ | IRES bound to bacterial Ribosome | x-ray diffraction | ATHX, BTHX | — | 3 (best 0.87) |
| 5D8B | Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch | x-ray diffraction | VA, RC | MG | 1 (best 0.88) |
| 5J4D | E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon | x-ray diffraction | DB, ID | MG | 2 (best 0.88) |
| 5V8I | Thermus thermophilus 70S ribosome lacking ribosomal protein uS17 | x-ray diffraction | 1u, 2u | MG | — |
| 6BOH | Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the… | x-ray diffraction | EB, JD | MG | 4 (best 0.89) |
| 6BOK | E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | x-ray diffraction | CB, FD | — | 4 (best 0.88) |
| 6N1D | X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric… | x-ray diffraction | ATHX, BTHX | MG | — |
| P62613 | AlphaFold monomer V2.0 prediction for 30S ribosomal protein thx (P62613) | predicted | A | — | — |
Ligands
- MG · Magnesium ion · in 13 records
Experiment against prediction
- 5V8I chain 1u against the predicted model P62613: TM-score 0.82, RMSD 0.36 Å
- 4WQ1 chain 1F against the predicted model P62613: TM-score 0.75, RMSD 1.05 Å
- 5J4D chain DB against the predicted model P62613: TM-score 0.74, RMSD 0.51 Å
- 4KVB chain U against the predicted model P62613: TM-score 0.74, RMSD 0.63 Å
- 4KVB chain U against the predicted model P62613: TM-score 0.74, RMSD 0.63 Å
- 4WQ1 chain 1B against the predicted model P62613: TM-score 0.73, RMSD 1.17 Å
- 6BOK chain CB against the predicted model P62613: TM-score 0.69, RMSD 0.59 Å
- 4V67 chain AU against the predicted model P62613: TM-score 0.61, RMSD 1.08 Å
- 4V9Q chain BU against the predicted model P62613: TM-score 0.58, RMSD 1.30 Å
- 4V83 chain AU against the predicted model P62613: TM-score 0.57, RMSD 1.04 Å
Elsewhere
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.