UniProt P62238
30S ribosomal protein S16 (P62238)
30S ribosomal protein S16 (UniProt P62238): 23 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 1 pocket. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P62238
- Protein
- 30S ribosomal protein S16
- Experimental structures
- 23
- Predicted models
- 1
- Ligands
- 1
- Pockets
- 1 · 1 record with a druggable one
Structures
24 records of P62238 in the MolNFT archive: 23 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4KVB | Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17 | x-ray diffraction | P | — | — |
| 4KVB | Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17 | x-ray diffraction | P | — | — |
| 4V4I | Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. | x-ray diffraction | q | — | — |
| 4V4J | Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome. | x-ray diffraction | q | — | — |
| 4V63 | Structural basis for translation termination on the 70S ribosome. | x-ray diffraction | AP, CP | — | — |
| 4V67 | Crystal structure of a translation termination complex formed with release factor RF2. | x-ray diffraction | AP, CP | — | — |
| 4V7P | Recognition of the amber stop codon by release factor RF1. | x-ray diffraction | AP, DP | — | — |
| 4V83 | Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S… | x-ray diffraction | AP, CP | — | — |
| 4V84 | Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome. | x-ray diffraction | AP, CP | — | — |
| 4V9J | 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and… | x-ray diffraction | AP, CP | — | — |
| 4V9K | 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and… | x-ray diffraction | AP, CP | — | — |
| 4V9L | 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP… | x-ray diffraction | AP, CP | — | — |
| 4V9M | 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP… | x-ray diffraction | AP, CP | — | — |
| 4V9N | Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2. | x-ray diffraction | AP, CP | — | — |
| 4V9Q | Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome. | x-ray diffraction | BP, DP | — | — |
| 4W29 | 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA… | x-ray diffraction | AP, CP | — | — |
| 4XEJ | IRES bound to bacterial Ribosome | x-ray diffraction | AS16, BS16 | — | 1 (best 0.87) |
| 4ZER | Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome | x-ray diffraction | 1p, 2p | MG | — |
| 5J4D | E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon | x-ray diffraction | YA, DD | MG | — |
| 6BOH | Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the… | x-ray diffraction | ZA, ED | MG | — |
| 6BOK | E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome | x-ray diffraction | XA, AD | MG | — |
| 6N9E | Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic… | x-ray diffraction | 1p, 2p | MG | — |
| 6N9F | Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic… | x-ray diffraction | 1p, 2p | MG | — |
| P62238 | AlphaFold monomer V2.0 prediction for 30S ribosomal protein S16 (P62238) | predicted | A | — | — |
Ligands
- MG · Magnesium ion · in 6 records
Experiment against prediction
- 4ZER chain 2p against the predicted model P62238: TM-score 0.98, RMSD 0.45 Å
- 5J4D chain YA against the predicted model P62238: TM-score 0.98, RMSD 0.53 Å
- 4ZER chain 1p against the predicted model P62238: TM-score 0.98, RMSD 0.50 Å
- 5J4D chain DD against the predicted model P62238: TM-score 0.98, RMSD 0.53 Å
- 4V9Q chain BP against the predicted model P62238: TM-score 0.98, RMSD 0.54 Å
- 6BOH chain ZA against the predicted model P62238: TM-score 0.97, RMSD 0.55 Å
- 6BOH chain ED against the predicted model P62238: TM-score 0.97, RMSD 0.55 Å
- 6N9F chain 1p against the predicted model P62238: TM-score 0.97, RMSD 0.55 Å
- 6N9E chain 1p against the predicted model P62238: TM-score 0.97, RMSD 0.56 Å
- 4V67 chain AP against the predicted model P62238: TM-score 0.97, RMSD 0.63 Å
Elsewhere
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