UniProt P60494
50S ribosomal protein L28 (P60494)
50S ribosomal protein L28 (UniProt P60494): 213 experimental structures and 1 predicted model on GenesisL1, 3 ligands bound, 53 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P60494
- Protein
- 50S ribosomal protein L28
- Experimental structures
- 213
- Predicted models
- 1
- Ligands
- 3
- Pockets
- 53 · 41 records with a druggable one
Structures
214 records of P60494 in the MolNFT archive: 213 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1VVJ | Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome | x-ray diffraction | R1, Y1 | — | — |
| 1VY4 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond… | x-ray diffraction | B1, D1 | — | — |
| 1VY5 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide… | x-ray diffraction | B1, D1 | — | — |
| 1VY6 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond… | x-ray diffraction | B1, D1 | — | — |
| 1VY7 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond… | x-ray diffraction | B1, D1 | — | — |
| 4L47 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome | x-ray diffraction | R1, Y1 | — | — |
| 4L71 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome | x-ray diffraction | R1, Y1 | — | — |
| 4LEL | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome | x-ray diffraction | R1, Y1 | — | — |
| 4LFZ | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of… | x-ray diffraction | R1, Y1 | — | — |
| 4LNT | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | x-ray diffraction | R1, Y1 | — | — |
| 4LSK | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome | x-ray diffraction | R1, Y1 | — | — |
| 4LT8 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome | x-ray diffraction | R1, Y1 | — | — |
| 4P6F | Crystal structure of the peptolide 12C bound to bacterial ribosome | x-ray diffraction | R1, Y1 | — | — |
| 4P70 | Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome | x-ray diffraction | R1, Y1 | — | — |
| 4TUA | Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome | x-ray diffraction | R1, Y1 | — | — |
| 4TUB | Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome | x-ray diffraction | R1, Y1 | — | — |
| 4TUC | Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome | x-ray diffraction | R1, Y1 | — | — |
| 4TUD | Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome | x-ray diffraction | R1, Y1 | — | — |
| 4TUE | Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome | x-ray diffraction | R1, Y1 | — | — |
| 4V51 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | x-ray diffraction | B1, D1 | — | — |
| 4V5A | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with… | x-ray diffraction | B1, D1 | — | — |
| 4V5C | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated… | x-ray diffraction | B1, D1 | — | — |
| 4V5D | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A… | x-ray diffraction | B1, D1 | — | — |
| 4V5E | Insights into translational termination from the structure of RF2 bound to the ribosome | x-ray diffraction | B1, D1 | — | — |
| 4V5F | The structure of the ribosome with elongation factor G trapped in the post-translocational state | x-ray diffraction | B1, D1 | — | — |
| 4V5G | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | x-ray diffraction | B1, D1 | — | — |
| 4V5J | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights… | x-ray diffraction | B1, D1 | — | — |
| 4V5K | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | x-ray diffraction | B1, D1 | — | — |
| 4V5L | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | x-ray diffraction | B1 | — | — |
| 4V5M | tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE) | electron microscopy | B1 | — | — |
| 4V5N | tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate… | electron microscopy | B1 | — | — |
| 4V5P | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | x-ray diffraction | B1, D1 | — | — |
| 4V5Q | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | x-ray diffraction | B1, D1 | — | — |
| 4V5R | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | x-ray diffraction | B1, D1 | — | — |
| 4V5S | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | x-ray diffraction | B1, D1 | — | — |
| 4V68 | T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex… | electron microscopy | B1 | — | — |
| 4V6A | Structure of EF-P bound to the 70S ribosome. | x-ray diffraction | B1, D1 | — | — |
| 4V6F | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | x-ray diffraction | AZ, DZ | — | — |
| 4V6G | Initiation complex of 70S ribosome with two tRNAs and mRNA. | x-ray diffraction | BZ, DZ | — | — |
| 4V7J | Structure of RelE nuclease bound to the 70S ribosome (precleavage state) | x-ray diffraction | A1, B1 | — | — |
| 4V7K | Structure of RelE nuclease bound to the 70S ribosome (postcleavage state) | x-ray diffraction | A1, B1 | — | — |
| 4V7L | The structures of viomycin bound to the 70S ribosome. | x-ray diffraction | B1, D1 | — | — |
| 4V7M | The structures of Capreomycin bound to the 70S ribosome. | x-ray diffraction | B1, D1 | — | — |
| 4V7W | Structure of the Thermus thermophilus ribosome complexed with chloramphenicol. | x-ray diffraction | B1, D1 | — | — |
| 4V7X | Structure of the Thermus thermophilus ribosome complexed with erythromycin. | x-ray diffraction | B1, D1 | — | — |
| 4V7Y | Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin. | x-ray diffraction | B1, D1 | — | — |
| 4V7Z | Structure of the Thermus thermophilus 70S ribosome complexed with telithromycin. | x-ray diffraction | B1, D1 | — | — |
| 4V87 | Crystal structure analysis of ribosomal decoding. | x-ray diffraction | AZ, DZ | — | — |
| 4V8A | The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus. | x-ray diffraction | A1, B1 | — | — |
| 4V8B | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | x-ray diffraction | BZ, DZ | — | — |
| 4V8C | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | x-ray diffraction | AZ, BZ | — | — |
| 4V8D | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | x-ray diffraction | BZ, DZ | — | — |
| 4V8E | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | x-ray diffraction | AZ, CZ | — | — |
| 4V8F | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). | x-ray diffraction | AZ, DZ | — | — |
| 4V8G | Crystal structure of RMF bound to the 70S ribosome. | x-ray diffraction | B1, D1 | — | — |
| 4V8H | Crystal structure of HPF bound to the 70S ribosome. | x-ray diffraction | B1, D1 | — | — |
| 4V8I | Crystal structure of YfiA bound to the 70S ribosome. | x-ray diffraction | B1, D1 | — | — |
| 4V8J | Crystal structure of the bacterial ribosome ram mutation G347U. | x-ray diffraction | B1, D1 | — | — |
| 4V8N | The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site. | x-ray diffraction | B1, D1 | — | — |
| 4V8O | Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase… | x-ray diffraction | B1 | — | — |
154 records more on the page itself.
Ligands
Experiment against prediction
- 6OXI chain Y1 against the predicted model P60494: TM-score 0.89, RMSD 1.59 Å
- 6OTR chain Y1 against the predicted model P60494: TM-score 0.89, RMSD 1.59 Å
- 1VY7 chain B1 against the predicted model P60494: TM-score 0.89, RMSD 1.63 Å
- 6CZR chain 21 against the predicted model P60494: TM-score 0.89, RMSD 1.62 Å
- 6OF1 chain 21 against the predicted model P60494: TM-score 0.89, RMSD 1.60 Å
- 6XHY chain 21 against the predicted model P60494: TM-score 0.89, RMSD 1.65 Å
- 6ND5 chain 21 against the predicted model P60494: TM-score 0.89, RMSD 1.63 Å
- 5DOY chain 11 against the predicted model P60494: TM-score 0.89, RMSD 1.64 Å
- 6ND5 chain 11 against the predicted model P60494: TM-score 0.89, RMSD 1.65 Å
- 4W2I chain B1 against the predicted model P60494: TM-score 0.89, RMSD 1.64 Å
Elsewhere
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