UniProt P43478
Kappa-carrageenase (P43478)
Kappa-carrageenase (UniProt P43478), EC 3.2.1.83: 4 experimental structures and 1 predicted model on GenesisL1, 4 ligands bound, 6 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P43478
- Protein
- Kappa-carrageenase
- EC
- 3.2.1.83
- Experimental structures
- 4
- Predicted models
- 1
- Ligands
- 4
- Pockets
- 6 · 4 records with a druggable one
Structures
5 records of P43478 in the MolNFT archive: 4 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1DYP | 1,3-alpha-1,4-beta-D-galactose-4-sulfate-3,6-anhydro-D-galactose 4 galactohydrolase | x-ray diffraction | A | CD, CL | 1 (best 0.70) |
| 1DYP | 1,3-alpha-1,4-beta-D-galactose-4-sulfate- 3,6-anhydro-D-galactose 4 galactohydrolase | x-ray diffraction | A | CD, CL | 1 (best 0.70) |
| 5OCQ | Crystal structure of the complex of the kappa-carrageenase from Pseudoalteromonas carrageenovora… | x-ray diffraction | A, B | G4S, 9RN | 2 (best 0.71) |
| 5OCQ | Crystal structure of the complex of the kappa-carrageenase from pseudoalteromonas carrageenovora… | x-ray diffraction | A, B | 9RN, G4S | 2 (best 0.71) |
| P43478 | AlphaFold monomer V2.0 prediction for kappa-carrageenase (P43478) | predicted | A | — | — |
Ligands
Experiment against prediction
- 1DYP chain A against the predicted model P43478: TM-score 1.00, RMSD 0.28 Å
- 1DYP chain A against the predicted model P43478: TM-score 1.00, RMSD 0.28 Å
- 5OCQ chain A against the predicted model P43478: TM-score 1.00, RMSD 0.29 Å
- 5OCQ chain A against the predicted model P43478: TM-score 1.00, RMSD 0.29 Å
- 5OCQ chain B against the predicted model P43478: TM-score 0.97, RMSD 0.69 Å
- 5OCQ chain B against the predicted model P43478: TM-score 0.97, RMSD 0.69 Å
Elsewhere
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