UniProt P39099
Periplasmic pH-dependent serine endoprotease degq (P39099)
Periplasmic pH-dependent serine endoprotease degq (UniProt P39099), EC 3.4.21.-, 3.4.21.107: 12 experimental structures and 1 predicted model on GenesisL1, 212 pockets. Binding sites, druggability and experiment against…
- UniProt
- P39099
- Protein
- Periplasmic pH-dependent serine endoprotease degq
- EC
- 3.4.21.-, 3.4.21.107
- Experimental structures
- 12
- Predicted models
- 1
- Pockets
- 212 · 12 records with a druggable one
Structures
13 records of P39099 in the MolNFT archive: 12 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3STI | Crystal structure of the protease domain of DegQ from Escherichia coli | x-ray diffraction | A, B, C | — | 6 (best 0.74) |
| 3STI | Crystal structure of the protease domain of degq from escherichia COLI | x-ray diffraction | A, B, C | — | 6 (best 0.74) |
| 3STJ | Crystal structure of the protease + PDZ1 domain of DegQ from Escherichia coli | x-ray diffraction | A, B, C, D, E, F, G, H, I, J, K, L | — | 20 (best 0.75) |
| 3STJ | Crystal structure of the protease + PDZ1 domain of degq from escherichia COLI | x-ray diffraction | A, B, C, D, E, F, G, H, I, J, K, L | — | 20 (best 0.75) |
| 4A8A | Asymmetric cryo-EM reconstruction of E. coli DegQ 12-mer in complex with lysozyme | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L | — | 20 (best 0.68) |
| 4A8A | Asymmetric cryo-EM reconstruction of E. COLI degq 12-mer in complex with lysozyme | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L | — | 20 (best 0.68) |
| 4A8B | Symmetrized cryo-EM reconstruction of E. coli DegQ 12-mer in complex with lysozymes | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L | — | 20 (best 0.65) |
| 4A8B | Symmetrized cryo-EM reconstruction of E. COLI degq 12-mer in complex with lysozymes | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L | — | 20 (best 0.65) |
| 4A8C | Symmetrized cryo-EM reconstruction of E. coli DegQ 12-mer in complex with a binding peptide | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L | — | 20 (best 0.72) |
| 4A8C | Symmetrized cryo-EM reconstruction of E. COLI degq 12-mer in complex with a binding peptide | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L | — | 20 (best 0.72) |
| 4A9G | Symmetrized cryo-EM reconstruction of E. coli DegQ 24-mer in complex with beta-casein | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, Y | — | 20 (best 0.57) |
| 4A9G | Symmetrized cryo-EM reconstruction of E. COLI degq 24-mer in complex with beta-casein | electron microscopy | A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, Y | — | 20 (best 0.57) |
| P39099 | AlphaFold monomer V2.0 prediction for periplasmic pH-dependent serine endoprotease degq (P39099) | predicted | A | — | — |
Experiment against prediction
- 3STJ chain H against the predicted model P39099: TM-score 0.99, RMSD 0.61 Å
- 3STJ chain H against the predicted model P39099: TM-score 0.99, RMSD 0.61 Å
- 3STJ chain D against the predicted model P39099: TM-score 0.99, RMSD 0.65 Å
- 3STJ chain D against the predicted model P39099: TM-score 0.99, RMSD 0.65 Å
- 3STJ chain C against the predicted model P39099: TM-score 0.99, RMSD 0.65 Å
- 3STJ chain C against the predicted model P39099: TM-score 0.99, RMSD 0.65 Å
- 3STJ chain F against the predicted model P39099: TM-score 0.99, RMSD 0.68 Å
- 3STJ chain F against the predicted model P39099: TM-score 0.99, RMSD 0.68 Å
- 3STJ chain I against the predicted model P39099: TM-score 0.99, RMSD 0.69 Å
- 3STJ chain I against the predicted model P39099: TM-score 0.99, RMSD 0.69 Å
Elsewhere
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