UniProt P30902

ATP synthase subunit d (P30902)

ATP synthase subunit d (UniProt P30902): 58 experimental structures and 1 predicted model on GenesisL1, 39 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.

UniProt: P30902
Protein: ATP synthase subunit d
Experimental structures: 58
Predicted models: 1
Pockets: 39 · 20 records with a druggable one

Structures

59 records of P30902 in the MolNFT archive: 58 experimental, 1 predicted.

Entry	Title	Method	Chains	Ligands	Pockets
6B2Z	Cryo-EM structure of the dimeric FO region of yeast mitochondrial ATP synthase	electron microscopy	d, O	—	6 (best 0.76)
6B2Z	Cryo-EM structure of the dimeric fo region of yeast mitochondrial ATP synthase	electron microscopy	d, O	—	—
6B8H	Mosaic model of yeast mitochondrial ATP synthase monomer	electron microscopy	d, r	—	—
6CP3	Monomer yeast ATP synthase (F1Fo) reconstituted in nanodisc with inhibitor of oligomycin bound.	electron microscopy	7	—	3 (best 0.79)
6CP3	Monomer yeast ATP synthase (F1FO) reconstituted in nanodisc with inhibitor of oligomycin bound.	electron microscopy	7	—	—
6CP5	Monomer yeast ATP synthase fo reconstituted in nanodisc with inhibitor of oligomycin bound…	electron microscopy	7	—	—
6CP6	Monomer yeast ATP synthase (F1Fo) reconstituted in nanodisc.	electron microscopy	7	—	1 (best 0.79)
6CP6	Monomer yeast ATP synthase (F1FO) reconstituted in nanodisc.	electron microscopy	7	—	—
6CP7	Monomer yeast ATP synthase fo reconstituted in nanodisc generated from masked refinement.	electron microscopy	7	—	—
6WTD	Monomer yeast ATP synthase Fo reconstituted in nanodisc with inhibitor of Bedaquiline bound	electron microscopy	7	—	5 (best 0.79)
6WTD	Monomer yeast ATP synthase fo reconstituted in nanodisc with inhibitor of bedaquiline bound	electron microscopy	7	—	—
7TJZ	Yeast ATP synthase state 1CATALYTIC(B) without exogenous ATP backbone model	electron microscopy	V	—	—
7TK0	Yeast ATP synthase State 1catalytic(c) without exogenous ATP backbone model	electron microscopy	V	—	—
7TK1	Yeast ATP synthase State 1catalytic(d) without exogenous ATP backbone model	electron microscopy	V	—	2 (best 0.65)
7TK1	Yeast ATP synthase state 1CATALYTIC(D) without exogenous ATP backbone model	electron microscopy	V	—	—
7TK2	Yeast ATP synthase state 1BINDING(A) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TK3	Yeast ATP synthase State 1binding(b) with 10 mM ATP backbone model	electron microscopy	V	—	1 (best 0.63)
7TK4	Yeast ATP synthase State 1binding(c) with 10 mM ATP backbone model	electron microscopy	V	—	—
7TK4	Yeast ATP synthase state 1BINDING(C) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TK5	Yeast ATP synthase state 1BINDING(D) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TK6	Yeast ATP synthase State 1catalytic(a) with 10 mM ATP backbone model	electron microscopy	V	—	1 (best 0.61)
7TK7	Yeast ATP synthase State 1catalytic(b) with 10 mM ATP backbone model	electron microscopy	V	—	1 (best 0.62)
7TK7	Yeast ATP synthase state 1CATALYTIC(B) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TK8	Yeast ATP synthase State 1catalytic(c) with 10 mM ATP backbone model	electron microscopy	V	—	2 (best 0.64)
7TK8	Yeast ATP synthase state 1CATALYTIC(C) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TK9	Yeast ATP synthase State 1catalytic(d) with 10 mM ATP backbone model	electron microscopy	V	—	2 (best 0.63)
7TK9	Yeast ATP synthase state 1CATALYTIC(D) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKA	Yeast ATP synthase State 1catalytic(e) with 10 mM ATP backbone model	electron microscopy	V	—	1 (best 0.63)
7TKA	Yeast ATP synthase state 1CATALYTIC(E) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKB	Yeast ATP synthase State 1catalytic(f) with 10 mM ATP backbone model	electron microscopy	V	—	—
7TKB	Yeast ATP synthase state 1CATALYTIC(F) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKC	Yeast ATP synthase State 1catalytic(g) with 10 mM ATP backbone model	electron microscopy	V	—	—
7TKC	Yeast ATP synthase state 1CATALYTIC(G) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKD	Yeast ATP synthase state 1CATALYTIC(H) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKE	Yeast ATP synthase State 2binding(a) with 10 mM ATP backbone model	electron microscopy	V	—	1 (best 0.63)
7TKE	Yeast ATP synthase state 2BINDING(A) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKF	Yeast ATP synthase State 2binding(b) with 10 mM ATP backbone model	electron microscopy	V	—	—
7TKF	Yeast ATP synthase state 2BINDING(B) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKG	Yeast ATP synthase state 2CATALYTIC(A) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKH	Yeast ATP synthase State 2catalytic(b) with 10 mM ATP backbone model	electron microscopy	V	—	1 (best 0.66)
7TKH	Yeast ATP synthase state 2CATALYTIC(B) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKI	Yeast ATP synthase state 2CATALYTIC(C) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKJ	Yeast ATP synthase State 2catalytic(d) with 10 mM ATP backbone model	electron microscopy	V	—	—
7TKJ	Yeast ATP synthase state 2CATALYTIC(D) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKK	Yeast ATP synthase state 2CATALYTIC(E) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKL	Yeast ATP synthase state 3BINDING(A) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKN	Yeast ATP synthase state 3BINDING(C) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKO	Yeast ATP synthase State 3catalytic(a) with 10 mM ATP backbone model	electron microscopy	V	—	1 (best 0.59)
7TKO	Yeast ATP synthase state 3CATALYTIC(A) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKP	Yeast ATP synthase State 3catalytic(b) with 10 mM ATP backbone model	electron microscopy	V	—	2 (best 0.65)
7TKP	Yeast ATP synthase state 3CATALYTIC(B) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKQ	Yeast ATP synthase State 3catalytic(c) with 10 mM ATP backbone model	electron microscopy	V	—	1 (best 0.59)
7TKR	Yeast ATP synthase State 3catalytic(d) with 10 mM ATP backbone model	electron microscopy	V	—	1 (best 0.63)
7TKR	Yeast ATP synthase state 3CATALYTIC(D) with 10 mm ATP backbone model	electron microscopy	V	—	—
7TKS	Yeast ATP synthase state 3CATALYTIC(E) with 10 mm ATP backbone model	electron microscopy	V	—	—
8F39	Yeast ATP synthase in conformation-2, at pH 6	electron microscopy	7	—	4 (best 0.84)
8FKJ	Yeast ATP Synthase in conformation-3, at pH 6	electron microscopy	7	—	1 (best 0.76)
8FL8	Yeast ATP Synthase structure in presence of MgATP	electron microscopy	7	—	2 (best 0.87)
P30902	AlphaFold monomer V2.0 prediction for ATP synthase subunit D, mitochondrial (P30902)	predicted	A	—	—

Experiment against prediction

6CP5 chain 7 against the predicted model P30902: TM-score 0.73, RMSD 2.18 Å
6B2Z chain d against the predicted model P30902: TM-score 0.72, RMSD 2.23 Å
6B2Z chain d against the predicted model P30902: TM-score 0.72, RMSD 2.23 Å
6B2Z chain O against the predicted model P30902: TM-score 0.72, RMSD 2.23 Å
6B2Z chain O against the predicted model P30902: TM-score 0.72, RMSD 2.23 Å
6CP7 chain 7 against the predicted model P30902: TM-score 0.72, RMSD 2.15 Å
6WTD chain 7 against the predicted model P30902: TM-score 0.69, RMSD 2.41 Å
6WTD chain 7 against the predicted model P30902: TM-score 0.69, RMSD 2.41 Å
7TKE chain V against the predicted model P30902: TM-score 0.63, RMSD 3.56 Å
7TKE chain V against the predicted model P30902: TM-score 0.63, RMSD 3.56 Å

Elsewhere

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