UniProt P23839

Endoribonuclease YicC (P23839)

Endoribonuclease YicC (UniProt P23839), EC 3.1.26.-: 3 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 57 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.

UniProt: P23839
Protein: Endoribonuclease YicC
EC: 3.1.26.-
Experimental structures: 3
Predicted models: 1
Ligands: 1
Pockets: 57 · 3 records with a druggable one

Structures

4 records of P23839 in the MolNFT archive: 3 experimental, 1 predicted.

Entry	Title	Method	Chains	Ligands	Pockets
8HVJ	The structure of the E. coli mRNA endoonuclease YiCC	x-ray diffraction	A, B, C	—	17 (best 0.75)
8VER	Structure of YicC endoribonuclease	x-ray diffraction	A, B, C, D, E, F	SO4	20 (best 0.73)
8VES	Structure of YicC endoribonuclease bound to an RNA substrate	electron microscopy	A, C, B, E, D, F	—	20 (best 0.83)
P23839	AlphaFold monomer V2.0 prediction for UPF0701 protein yicc (P23839)	predicted	A	—	—

Ligands

SO4 · Sulfate ion · in 1 record

Experiment against prediction

8VES chain D against the predicted model P23839: TM-score 0.93, RMSD 1.75 Å
8HVJ chain A against the predicted model P23839: TM-score 0.93, RMSD 1.72 Å
8VER chain A against the predicted model P23839: TM-score 0.92, RMSD 2.05 Å
8VER chain B against the predicted model P23839: TM-score 0.91, RMSD 1.99 Å
8VER chain D against the predicted model P23839: TM-score 0.90, RMSD 2.27 Å
8VES chain E against the predicted model P23839: TM-score 0.90, RMSD 2.33 Å
8VER chain F against the predicted model P23839: TM-score 0.86, RMSD 2.49 Å
8HVJ chain C against the predicted model P23839: TM-score 0.85, RMSD 2.96 Å
8VES chain F against the predicted model P23839: TM-score 0.83, RMSD 3.10 Å
8VER chain E against the predicted model P23839: TM-score 0.83, RMSD 2.61 Å

Elsewhere

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.