UniProt P22808

Homeobox protein vnd (P22808)

Homeobox protein vnd (UniProt P22808): 8 experimental structures and 1 predicted model on GenesisL1, 2 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.

UniProt: P22808
Protein: Homeobox protein vnd
Experimental structures: 8
Predicted models: 1
Pockets: 2 · 0 records with a druggable one

Structures

9 records of P22808 in the MolNFT archive: 8 experimental, 1 predicted.

Entry	Title	Method	Chains	Ligands	Pockets
1NK2	VND/NK-2 HOMEODOMAIN/DNA complex, NMR, 20 structures	solution nmr	P	—	1 (best 0.50)
1NK2	VND/NK-2 HOMEODOMAIN/DNA complex, NMR, 20 structures	solution nmr	P	—	—
1NK3	VND/NK-2 HOMEODOMAIN/DNA complex, NMR, minimized average structure	solution nmr	P	—	1 (best 0.47)
1NK3	VND/NK-2 HOMEODOMAIN/DNA complex, NMR, minimized average structure	solution nmr	P	—	—
1QRY	Homeobox protein VND (ventral nervous system defective protein)	solution nmr	A	—	—
1QRY	Homeobox protein vnd (ventral nervous system defective protein)	solution nmr	A	—	—
1VND	VND/NK-2 protein (homeodomain), NMR	solution nmr	A	—	—
1VND	VND/NK-2 protein (homeodomain), NMR	solution nmr	A	—	—
P22808	AlphaFold monomer V2.0 prediction for homeobox protein vnd (P22808)	predicted	A	—	—

Experiment against prediction

1NK3 chain P against the predicted model P22808: TM-score 0.86, RMSD 1.67 Å
1NK3 chain P against the predicted model P22808: TM-score 0.86, RMSD 1.67 Å
1NK2 chain P against the predicted model P22808: TM-score 0.74, RMSD 2.38 Å
1NK2 chain P against the predicted model P22808: TM-score 0.74, RMSD 2.38 Å
1QRY chain A against the predicted model P22808: TM-score 0.63, RMSD 3.30 Å
1QRY chain A against the predicted model P22808: TM-score 0.63, RMSD 3.30 Å
1VND chain A against the predicted model P22808: TM-score 0.59, RMSD 2.59 Å
1VND chain A against the predicted model P22808: TM-score 0.59, RMSD 2.59 Å

Elsewhere

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