UniProt P22392
Nucleoside diphosphate kinase B (P22392)
Nucleoside diphosphate kinase B (UniProt P22392), EC 2.7.13.3, 2.7.4.6: 12 experimental structures and 1 predicted model on GenesisL1, 3 ligands bound, 15 pockets. Binding sites, druggability and experiment against prediction…
- UniProt
- P22392
- Protein
- Nucleoside diphosphate kinase B
- EC
- 2.7.13.3, 2.7.4.6
- Experimental structures
- 12
- Predicted models
- 1
- Ligands
- 3
- Pockets
- 15 · 1 record with a druggable one
Structures
13 records of P22392 in the MolNFT archive: 12 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1NSK | The crystal structure of a human nucleoside diphosphate kinase, NM23-H2 | x-ray diffraction | R, L, T, U, N, O | — | — |
| 1NSK | The crystal structure of a human nucleoside diphosphate kinase, NM23-H2 | x-ray diffraction | R, L, T, U, N, O | — | — |
| 1NUE | X-ray structure of NM23 human nucleoside diphosphate kinase B complexed with GDP at 2 ångströms… | x-ray diffraction | A, B, C, D, E, F | — | — |
| 1NUE | X-ray structure of NM23 human nucleoside diphosphate kinase B complexed with GDP at 2 ångströms… | x-ray diffraction | A, B, C, D, E, F | — | — |
| 3BBB | Crystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG) | x-ray diffraction | A, B, C, D, E, F | — | — |
| 3BBB | Crystal structure of the NM23-H2 transcription factor complex with dinucleotide D(AG) | x-ray diffraction | A, B, C, D, E, F | — | — |
| 3BBC | Crystal structure of R88A mutant of the NM23-H2 transcription factor | x-ray diffraction | A, B, C, D, E, F | — | — |
| 3BBC | Crystal structure of R88A mutant of the NM23-H2 transcription factor | x-ray diffraction | A, B, C, D, E, F | — | — |
| 3BBF | Crystal structure of the NM23-H2 transcription factor complex with GDP | x-ray diffraction | A, B, C, D, E, F | — | — |
| 3BBF | Crystal structure of the NM23-H2 transcription factor complex with GDP | x-ray diffraction | A, B, C, D, E, F | — | — |
| 7KPF | NME2 bound to myristoyl-CoA | x-ray diffraction | A, B, C, D, E, F | MYA, MG | 14 (best 0.87) |
| 7KPF | NME2 bound to myristoyl-CoA | x-ray diffraction | A, B, C, D, E, F | WYV, MG | — |
| P22392 | AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase B (P22392) | predicted | A | — | 1 (best 0.48) |
Ligands
Experiment against prediction
- 7KPF chain A against the predicted model P22392: TM-score 1.00, RMSD 0.29 Å
- 7KPF chain A against the predicted model P22392: TM-score 1.00, RMSD 0.29 Å
- 7KPF chain C against the predicted model P22392: TM-score 1.00, RMSD 0.31 Å
- 3BBB chain A against the predicted model P22392: TM-score 0.99, RMSD 0.33 Å
- 3BBB chain A against the predicted model P22392: TM-score 0.99, RMSD 0.33 Å
- 7KPF chain B against the predicted model P22392: TM-score 0.99, RMSD 0.34 Å
- 3BBF chain A against the predicted model P22392: TM-score 0.99, RMSD 0.38 Å
- 3BBF chain A against the predicted model P22392: TM-score 0.99, RMSD 0.38 Å
- 7KPF chain F against the predicted model P22392: TM-score 0.99, RMSD 0.38 Å
- 7KPF chain F against the predicted model P22392: TM-score 0.99, RMSD 0.38 Å
Elsewhere
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