UniProt P16098
Beta-amylase (P16098)
Beta-amylase (UniProt P16098), EC 3.2.1.2: 14 experimental structures and 1 predicted model on GenesisL1, 7 ligands bound, 54 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P16098
- Protein
- Beta-amylase
- EC
- 3.2.1.2
- Experimental structures
- 14
- Predicted models
- 1
- Ligands
- 7
- Pockets
- 54 · 14 records with a druggable one
Structures
15 records of P16098 in the MolNFT archive: 14 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1B1Y | Sevenfold mutant of barley beta-amylase | x-ray diffraction | A | BGC, GLC | 4 (best 0.76) |
| 1B1Y | Sevenfold mutant of barley beta-amylase | x-ray diffraction | A | BGC, GLC | 4 (best 0.76) |
| 2XFF | Crystal structure of Barley Beta-Amylase complexed with acarbose | x-ray diffraction | A | BGC, GLC, AC1 | 4 (best 0.72) |
| 2XFF | Crystal structure of barley beta-amylase complexed with acarbose | x-ray diffraction | A | BGC, GLC, AC1 | 4 (best 0.72) |
| 2XFR | Crystal structure of barley beta-amylase at atomic resolution | x-ray diffraction | A | — | 3 (best 0.73) |
| 2XFR | Crystal structure of barley beta-amylase at atomic resolution | x-ray diffraction | A | — | 3 (best 0.73) |
| 2XFY | Crystal structure of Barley Beta-Amylase complexed with alpha- cyclodextrin | x-ray diffraction | A | GLC | 4 (best 0.73) |
| 2XFY | Crystal structure of barley beta-amylase complexed with alpha- cyclodextrin | x-ray diffraction | A | GLC | 4 (best 0.73) |
| 2XG9 | Crystal structure of Barley Beta-Amylase complexed with 4-O-alpha-D- glucopyranosylmoranoline | x-ray diffraction | A | NOJ, GLC | 3 (best 0.73) |
| 2XG9 | Crystal structure of barley beta-amylase complexed with 4-O-alpha-D- glucopyranosylmoranoline | x-ray diffraction | A | NOJ, GLC | 3 (best 0.73) |
| 2XGB | Crystal structure of Barley Beta-Amylase complexed with 2,3- epoxypropyl-alpha-D-glucopyranoside | x-ray diffraction | A | EPG | 4 (best 0.75) |
| 2XGB | Crystal structure of barley beta-amylase complexed with 2,3- epoxypropyl-alpha-D-glucopyranoside | x-ray diffraction | A | EPG | 4 (best 0.75) |
| 2XGI | Crystal structure of Barley Beta-Amylase complexed with 3,4- epoxybutyl alpha-D-glucopyranoside | x-ray diffraction | A | J5B, EBQ | 5 (best 0.73) |
| 2XGI | Crystal structure of barley beta-amylase complexed with 3,4- epoxybutyl alpha-D-glucopyranoside | x-ray diffraction | A | J5B, EBQ | 5 (best 0.73) |
| P16098 | AlphaFold monomer V2.0 prediction for beta-amylase (P16098) | predicted | A | — | — |
Ligands
- GLC · alpha-D-glucopyranose · in 8 records
- BGC · beta-D-glucopyranose · in 4 records
- AC1 · 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose · in 2 records
- EBQ · (3S)-3-hydroxybutyl alpha-D-glucopyranoside · in 2 records
- EPG · (2R)-oxiran-2-ylmethyl alpha-D-glucopyranoside · in 2 records
- J5B · (3R)-3-hydroxybutyl alpha-D-glucopyranoside · in 2 records
- NOJ · 1-deoxynojirimycin · in 2 records
Experiment against prediction
- 2XGB chain A against the predicted model P16098: TM-score 1.00, RMSD 0.31 Å
- 2XGB chain A against the predicted model P16098: TM-score 1.00, RMSD 0.31 Å
- 1B1Y chain A against the predicted model P16098: TM-score 1.00, RMSD 0.49 Å
- 1B1Y chain A against the predicted model P16098: TM-score 1.00, RMSD 0.49 Å
- 2XG9 chain A against the predicted model P16098: TM-score 0.99, RMSD 0.71 Å
- 2XG9 chain A against the predicted model P16098: TM-score 0.99, RMSD 0.71 Å
- 2XFF chain A against the predicted model P16098: TM-score 0.99, RMSD 0.71 Å
- 2XFF chain A against the predicted model P16098: TM-score 0.99, RMSD 0.71 Å
- 2XGI chain A against the predicted model P16098: TM-score 0.99, RMSD 0.71 Å
- 2XGI chain A against the predicted model P16098: TM-score 0.99, RMSD 0.71 Å
Elsewhere
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