UniProt P15266
Nucleoside diphosphate kinase (P15266)
Nucleoside diphosphate kinase (UniProt P15266), EC 2.7.4.6: 6 experimental structures and 1 predicted model on GenesisL1, 3 ligands bound, 13 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- P15266
- Protein
- Nucleoside diphosphate kinase
- EC
- 2.7.4.6
- Experimental structures
- 6
- Predicted models
- 1
- Ligands
- 3
- Pockets
- 13 · 6 records with a druggable one
Structures
7 records of P15266 in the MolNFT archive: 6 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1NHK | Crystal structure of myxococcus xanthus nucleoside diphosphate kinase and its interaction with a… | x-ray diffraction | R, L | CMP | 2 (best 0.52) |
| 1NHK | Crystal structure of myxococcus xanthus nucleoside diphosphate kinase and its interaction with a… | x-ray diffraction | R, L | CMP | 2 (best 0.52) |
| 1NLK | Crystal structure of myxococcus xanthus nucleoside diphosphate kinase and its interaction with a… | x-ray diffraction | R, L | MG, ADP | 2 (best 0.53) |
| 1NLK | Crystal structure of myxococcus xanthus nucleoside diphosphate kinase and its interaction with a… | x-ray diffraction | R, L | MG, ADP | 2 (best 0.53) |
| 2NCK | Crystal structure of myxococcus xanthus nucleoside diphosphate kinase and its interaction with a… | x-ray diffraction | R, L | — | 2 (best 0.52) |
| 2NCK | Crystal structure of myxococcus xanthus nucleoside diphosphate kinase and its interaction with a… | x-ray diffraction | R, L | — | 2 (best 0.52) |
| P15266 | AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (P15266) | predicted | A | — | 1 (best 0.48) |
Ligands
Experiment against prediction
- 1NHK chain L against the predicted model P15266: TM-score 0.99, RMSD 0.50 Å
- 1NHK chain L against the predicted model P15266: TM-score 0.99, RMSD 0.50 Å
- 1NLK chain R against the predicted model P15266: TM-score 0.99, RMSD 0.54 Å
- 1NLK chain R against the predicted model P15266: TM-score 0.99, RMSD 0.54 Å
- 2NCK chain L against the predicted model P15266: TM-score 0.99, RMSD 0.57 Å
- 2NCK chain L against the predicted model P15266: TM-score 0.99, RMSD 0.57 Å
- 1NHK chain R against the predicted model P15266: TM-score 0.98, RMSD 0.90 Å
- 1NHK chain R against the predicted model P15266: TM-score 0.98, RMSD 0.90 Å
- 2NCK chain R against the predicted model P15266: TM-score 0.98, RMSD 0.88 Å
- 2NCK chain R against the predicted model P15266: TM-score 0.98, RMSD 0.88 Å
Elsewhere
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