UniProt P13497
Bone morphogenetic protein 1 (P13497)
Bone morphogenetic protein 1 (UniProt P13497), EC 3.4.24.19: 15 experimental structures and 1 predicted model on GenesisL1, 9 ligands bound, 9 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- P13497
- Protein
- Bone morphogenetic protein 1
- EC
- 3.4.24.19
- Experimental structures
- 15
- Predicted models
- 1
- Ligands
- 9
- Pockets
- 9 · 5 records with a druggable one
Structures
16 records of P13497 in the MolNFT archive: 15 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3EDG | Crystal structure of bone morphogenetic protein 1 protease domain | x-ray diffraction | A | — | — |
| 3EDG | Crystal structure of bone morphogenetic protein 1 protease domain | x-ray diffraction | A | — | — |
| 3EDH | Crystal structure of bone morphogenetic protein 1 protease domain in complex with partially bound… | x-ray diffraction | A | — | — |
| 3EDH | Crystal structure of bone morphogenetic protein 1 protease domain in complex with partially bound… | x-ray diffraction | A | — | — |
| 6BSL | BMP1 complexed with a reverse hydroxymate - compound 22 | x-ray diffraction | A, B | SCN, ZN, EVV | 2 (best 0.71) |
| 6BSL | BMP1 complexed with a reverse hydroxymate - compound 22 | x-ray diffraction | A, B | ACE, SCN, ZN, EVV | — |
| 6BSM | BMP1 complexed with a reverse hydroxamate - compound 4 | x-ray diffraction | A | ZN, E7D | 1 (best 0.52) |
| 6BSM | BMP1 complexed with a reverse hydroxamate - compound 4 | x-ray diffraction | A | ACE, ZN, E7D | — |
| 6BTN | BMP1 complexed with a reverse hydroxymate - compound 1 | x-ray diffraction | A, B | ACE, ZN, E8M | — |
| 6BTO | BMP1 complexed with (2~{S})-2-[[(1~{R},3~{S},4~{S})-2-[(2~{R})-2-[2-(oxidanylamino)-2-oxidanylidene… | x-ray diffraction | A, B | SCN, ZN, E8P | 2 (best 0.70) |
| 6BTO | BMP1 complexed with (2~{S})-2-[[(1~{R},3~{S},4~{S})-2-[(2~{R})-2-[2… | x-ray diffraction | A, B | SCN, ZN, E8P | — |
| 6BTP | BMP1 complexed with a hydroxamate | x-ray diffraction | A, B | SCN, ZN, E8J | 2 (best 0.71) |
| 6BTP | BMP1 complexed with a hydroxamate | x-ray diffraction | A, B | ACE, SCN, ZN, E8J | — |
| 6BTQ | BMP1 complexed with a hydroxamate - compound 2 | x-ray diffraction | A, B | SCN, ZN, E8S | 2 (best 0.78) |
| 6BTQ | BMP1 complexed with a hydroxamate - compound 2 | x-ray diffraction | A, B | ACE, SCN, ZN, E8S | — |
| P13497 | AlphaFold monomer V2.0 prediction for bone morphogenetic protein 1 (P13497) | predicted | A | — | — |
Ligands
- ZN · Zinc ion · in 11 records
- SCN · Thiocyanate ion · in 8 records
- ACE · Acetyl group · in 5 records
- E7D · N-({[(2R)-2-{[hydroxy(hydroxymethyl) amino]methyl}heptanoyl]amino}methyl)-7-methoxy-1-benzofuran-2-carboxamide · in 2 records
- E8J · (1R,3S,4S)-2-{(2R)-2-[2-(hydroxyamino)-2-oxoethyl]heptanoyl}-N-(3-methoxypyrazin-2-yl)-2-azabicyclo[2.2.1]heptane-3-carboxamide · in 2 records
- E8P · (2~{S})-2-[[(1~{R},3~{S},4~{S})-2-[(2~{R})-2-[2-(oxidanylamino)-2-oxidanylidene-ethyl]heptanoyl]-2-azabicyclo[2.2.1]heptan-3-yl]carbonylamino]-2-phenyl-ethanoic acid · in 2 records
- E8S · N~2~-[(2H-1,3-benzodioxol-5-yl)methyl]-N-hydroxy-N~2~-[(4-methoxyphenyl)sulfonyl]-3-thiophen-2-yl-D-alaninamide · in 2 records
- EVV · N-(2-ethoxy-4-{5-[({[(2R)-2-{(1R)-1-[formyl(hydroxy) amino]propyl}heptanoyl]amino}methyl)carbamoyl]furan-2-yl}benzene-1-carbonyl)-L-aspartic acid · in 2 records
- E8M · (3S)-6-cyclohexyl-3-{3-[(dimethylamino)methyl]-1,2,4-oxadiazol-5-yl}-N-hydroxyhexanamide · in 1 record
Experiment against prediction
- 3EDG chain A against the predicted model P13497: TM-score 0.98, RMSD 0.81 Å
- 3EDG chain A against the predicted model P13497: TM-score 0.98, RMSD 0.81 Å
- 6BTO chain A against the predicted model P13497: TM-score 0.98, RMSD 0.96 Å
- 6BTO chain A against the predicted model P13497: TM-score 0.98, RMSD 0.96 Å
- 6BTP chain B against the predicted model P13497: TM-score 0.98, RMSD 0.99 Å
- 6BTP chain B against the predicted model P13497: TM-score 0.98, RMSD 0.99 Å
- 6BTO chain B against the predicted model P13497: TM-score 0.97, RMSD 1.02 Å
- 6BTO chain B against the predicted model P13497: TM-score 0.97, RMSD 1.02 Å
- 6BSL chain A against the predicted model P13497: TM-score 0.97, RMSD 0.97 Å
- 6BSL chain A against the predicted model P13497: TM-score 0.97, RMSD 0.97 Å
Elsewhere
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