UniProt P12240

Photosystem II reaction center protein I (P12240)

Photosystem II reaction center protein I (UniProt P12240): 51 experimental structures and 1 predicted model on GenesisL1, 6 ligands bound, 27 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…

UniProt: P12240
Protein: Photosystem II reaction center protein I
Experimental structures: 51
Predicted models: 1
Ligands: 6
Pockets: 27 · 19 records with a druggable one

Structures

52 records of P12240 in the MolNFT archive: 51 experimental, 1 predicted.

Entry	Title	Method	Chains	Ligands	Pockets
3WU2	Crystal structure analysis of Photosystem II complex	x-ray diffraction	I, i	—	—
3WU2	Crystal structure analysis of photosystem II complex	x-ray diffraction	I, i	—	—
4UB6	Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser	x-ray diffraction	I, i	—	—
4UB6	Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser	x-ray diffraction	I, i	—	—
4UB8	Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser	x-ray diffraction	I, i	—	—
4UB8	Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser	x-ray diffraction	I, i	—	—
5B5E	Crystal structure analysis of photosystem II complex	x-ray diffraction	I, i	—	—
5B66	Crystal structure analysis of photosystem II complex	x-ray diffraction	I, i	—	—
5GTH	Native XFEL structure of photosystem II (dark dataset)	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	2 (best 0.81)
5GTH	Native xfel structure of photosystem II (dark dataset)	x-ray diffraction	I, i	—	—
5GTI	Native XFEL structure of photosystem II (two flash dataset)	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	2 (best 0.81)
5GTI	Native xfel structure of photosystem II (two flash dataset)	x-ray diffraction	I, i	—	—
5V2C	Re-refinement of crystal structure of photosystem II complex	x-ray diffraction	I, i	CLA, BCR, LMG, SQD	1 (best 0.82)
5V2C	Re-refinement of crystal structure of photosystem II complex	x-ray diffraction	I, i	CLA, BCR, LMG	—
5WS5	Native XFEL structure of photosystem II (preflash dark dataset)	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	1 (best 0.82)
5WS5	Native xfel structure of photosystem II (preflash dark dataset)	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
5WS6	Native xfel structure of photosystem II (preflash two-flash dataset	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
6JLJ	Xfel structure of cyanobacterial photosystem II (dark state, DATASET1)	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
6JLK	Xfel structure of cyanobacterial photosystem II (1F state, DATASET1)	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
6JLL	XFEL structure of cyanobacterial photosystem II (2F state, dataset1)	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	2 (best 0.82)
6JLL	Xfel structure of cyanobacterial photosystem II (2F state, DATASET1)	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
6JLM	XFEL structure of cyanobacterial photosystem II (dark state, dataset2)	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	1 (best 0.82)
6JLM	Xfel structure of cyanobacterial photosystem II (dark state, DATASET2)	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
6JLN	Xfel structure of cyanobacterial photosystem II (1F state, DATASET2)	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
6JLO	Xfel structure of cyanobacterial photosystem II (2F state, DATASET2)	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
6JLP	Xfel structure of cyanobacterial photosystem II (3F state, DATASET2)	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
7CJI	Photosystem II structure in the S1 state	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
7CJJ	Photosystem II structure in the S2 state	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	1 (best 0.81)
7CJJ	Photosystem II structure in the S2 state	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
7COU	Structure of cyanobacterial photosystem II in the dark S1 state	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	1 (best 0.81)
7COU	Structure of cyanobacterial photosystem II in the dark S1 state	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
7CZL	Structural insights into a dimeric PSB27-photosystem II complex from a cyanobacterium…	electron microscopy	I, i	CLA, BCR, MGE	—
7D1T	Cryo-EM Structure of PSII at 1.95 angstrom resolution	electron microscopy	I, i	CLA, BCR, UNL, LMG	—
7D1T	Cryo-EM structure of psii at 1.95 ångström resolution	electron microscopy	I, i	CLA, BCR, UNL, LMG	—
7D1U	Cryo-EM structure of psii at 2.08 ångström resolution	electron microscopy	I, i	CLA, BCR, LMG, UNL	—
7DXA	PSII intermediate Psb28-RC47	electron microscopy	i	CLA, BCR, MGE	—
7DXA	Psii intermediate PSB28-RC47	electron microscopy	i	CLA, BCR, MGE	—
7DXH	Cryo-EM structure of PSII intermediate Psb28-PSII complex	electron microscopy	i	CLA, BCR, MGE	2 (best 0.77)
7DXH	Cryo-EM structure of psii intermediate PSB28-psii complex	electron microscopy	i	CLA, BCR, MGE	—
7EDA	Structure of monomeric photosystem II	electron microscopy	I	CLA, BCR, LMG	—
8GN1	Crystal structure of DBBQ-bound photosystem II complex	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	3 (best 0.81)
8IR5	XFEL structure of cyanobacterial photosystem II under dark conditions	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	1 (best 0.81)
8IR7	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-nanosecond delay	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	2 (best 0.81)
8IR9	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 30-microsecond delay	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	1 (best 0.81)
8IRA	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-microsecond…	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	1 (best 0.81)
8IRB	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	2 (best 0.81)
8IRC	XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay…	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	1 (best 0.81)
8IRD	XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 20-nanosecond…	x-ray diffraction	I, i	CLA, BCR, UNL, LMG	1 (best 0.81)
8IRE	XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 200-nanosecond…	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	—
8IRF	XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 1-microsecond…	x-ray diffraction	I, i	CLA, BCR, UNL, LMG	1 (best 0.81)
8IRI	XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 5-millisecond…	x-ray diffraction	I, i	CLA, BCR, LMG, UNL	1 (best 0.81)
P12240	AlphaFold monomer V2.0 prediction for photosystem II reaction center protein I (P12240)	predicted	A	—	—

Ligands

BCR · Beta-carotene · in 41 records
CLA · Chlorophyll A · in 41 records
LMG · 1,2-distearoyl-monogalactosyl-diglyceride · in 36 records
UNL · Unknown ligand · in 33 records
MGE · (1S)-2-(alpha-L-allopyranosyloxy)-1-[(tridecanoyloxy) methyl]ethyl palmitate · in 5 records
SQD · 1,2-di-O-acyl-3-O-[6-deoxy-6-sulfo-alpha-D-glucopyranosyl]-sn-glycerol · in 1 record

Experiment against prediction

7EDA chain I against the predicted model P12240: TM-score 0.89, RMSD 0.52 Å
7D1T chain I against the predicted model P12240: TM-score 0.88, RMSD 1.39 Å
7D1T chain I against the predicted model P12240: TM-score 0.88, RMSD 1.39 Å
5B5E chain I against the predicted model P12240: TM-score 0.87, RMSD 1.13 Å
7D1U chain I against the predicted model P12240: TM-score 0.87, RMSD 1.40 Å
5B66 chain I against the predicted model P12240: TM-score 0.87, RMSD 1.11 Å
8GN1 chain I against the predicted model P12240: TM-score 0.86, RMSD 1.06 Å
3WU2 chain I against the predicted model P12240: TM-score 0.85, RMSD 1.60 Å
3WU2 chain I against the predicted model P12240: TM-score 0.85, RMSD 1.60 Å
8GN1 chain i against the predicted model P12240: TM-score 0.85, RMSD 1.12 Å

Elsewhere

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