UniProt P11610

Antigen-presenting glycoprotein CD1d2 (P11610)

Antigen-presenting glycoprotein CD1d2 (UniProt P11610): 4 experimental structures and 1 predicted model on GenesisL1, 3 ligands bound, 8 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.

UniProt: P11610
Protein: Antigen-presenting glycoprotein CD1d2
Experimental structures: 4
Predicted models: 1
Ligands: 3
Pockets: 8 · 1 record with a druggable one

Structures

5 records of P11610 in the MolNFT archive: 4 experimental, 1 predicted.

Entry	Title	Method	Chains	Ligands	Pockets
6BMH	Crystal structure of MHC-I like protein	x-ray diffraction	A, C, E, G	NAG, F61	—
6BMH	Crystal structure of MHC-I like protein	x-ray diffraction	A, C, E, G	NAG, F61	—
6BMK	Crystal structure of MHC-I like protein	x-ray diffraction	A, C	NAG, F57	8 (best 0.83)
6BMK	Crystal structure of MHC-I like protein	x-ray diffraction	A, C	NAG, F57	—
P11610	AlphaFold monomer V2.0 prediction for antigen-presenting glycoprotein CD1D2 (P11610)	predicted	A	—	—

Ligands

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · in 4 records
F57 · (2R)-1-(decanoyloxy)-3-(phosphonooxy)propan-2-yl octadecanoate · in 2 records
F61 · N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]undecanamide · in 2 records

Experiment against prediction

6BMH chain E against the predicted model P11610: TM-score 0.99, RMSD 0.53 Å
6BMH chain E against the predicted model P11610: TM-score 0.99, RMSD 0.53 Å
6BMH chain G against the predicted model P11610: TM-score 0.99, RMSD 0.60 Å
6BMH chain G against the predicted model P11610: TM-score 0.99, RMSD 0.60 Å
6BMK chain C against the predicted model P11610: TM-score 0.98, RMSD 0.81 Å
6BMK chain C against the predicted model P11610: TM-score 0.98, RMSD 0.81 Å
6BMH chain C against the predicted model P11610: TM-score 0.98, RMSD 0.87 Å
6BMH chain C against the predicted model P11610: TM-score 0.98, RMSD 0.87 Å
6BMH chain A against the predicted model P11610: TM-score 0.98, RMSD 0.88 Å
6BMH chain A against the predicted model P11610: TM-score 0.98, RMSD 0.88 Å

Elsewhere

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