UniProt P0DSP3
Cyclic dipyrimidine nucleotide synthase (P0DSP3)
Cyclic dipyrimidine nucleotide synthase (UniProt P0DSP3), EC 2.7.7.-: 3 experimental structures and 1 predicted model on GenesisL1, 4 ligands bound, 11 pockets. Binding sites, druggability and experiment against prediction…
- UniProt
- P0DSP3
- Protein
- Cyclic dipyrimidine nucleotide synthase
- EC
- 2.7.7.-
- Experimental structures
- 3
- Predicted models
- 1
- Ligands
- 4
- Pockets
- 11 · 3 records with a druggable one
Structures
4 records of P0DSP3 in the MolNFT archive: 3 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 7X4F | Native CD-NTase LpCdnE | x-ray diffraction | A | SO4 | 2 (best 0.66) |
| 7X4Q | LpCdnE UTP Mg complex | x-ray diffraction | A, B | UTP, MG | 5 (best 0.73) |
| 7X4T | LpCdnE UMPNPP Mg complex | x-ray diffraction | A, B | 2KH, MG, SO4 | 4 (best 0.66) |
| P0DSP3 | AlphaFold monomer V2.0 prediction for cyclic dipyrimidine nucleotide synthase (P0DSP3) | predicted | A | — | — |
Ligands
Experiment against prediction
- 7X4T chain B against the predicted model P0DSP3: TM-score 0.97, RMSD 1.13 Å
- 7X4F chain A against the predicted model P0DSP3: TM-score 0.97, RMSD 1.19 Å
- 7X4Q chain B against the predicted model P0DSP3: TM-score 0.95, RMSD 1.26 Å
- 7X4Q chain A against the predicted model P0DSP3: TM-score 0.95, RMSD 1.26 Å
- 7X4T chain A against the predicted model P0DSP3: TM-score 0.93, RMSD 1.72 Å
Elsewhere
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