UniProt P0DQD2

Internalin B (P0DQD2)

Internalin B (UniProt P0DQD2): 5 experimental structures and 1 predicted model on GenesisL1, 2 ligands bound. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.

UniProt: P0DQD2
Protein: Internalin B
Experimental structures: 5
Predicted models: 1
Ligands: 2

Structures

6 records of P0DQD2 in the MolNFT archive: 5 experimental, 1 predicted.

Entry	Title	Method	Chains	Ligands	Pockets
7NMS	InlB392_T332E: T332E variant of Listeria monocytogenes InlB (internalin B) residues 36-392	x-ray diffraction	A	SO4	—
7NMS	INLB392_T332E: T332E variant of listeria monocytogenes inlb (internalin B) residues 36-392	x-ray diffraction	A	SO4	—
7PV8	INLB392_T332E: T332E variant of listeria monocytogenes inlb (internalin B) residues 36-392	x-ray diffraction	A	K	—
7PV9	Listeria monocytogene InlB (internalin B) residues 36-392 (internalin domain and B-repeat)	x-ray diffraction	A, B, C	—	—
7PV9	Listeria monocytogene inlb (internalin B) residues 36-392 (internalin domain and B-repeat)	x-ray diffraction	A, B, C	—	—
P0DQD2	AlphaFold monomer V2.0 prediction for internalin B (P0DQD2)	predicted	A	—	—

Ligands

SO4 · Sulfate ion · in 2 records
K · Potassium ion · in 1 record

Experiment against prediction

7PV8 chain A against the predicted model P0DQD2: TM-score 0.99, RMSD 0.73 Å
7NMS chain A against the predicted model P0DQD2: TM-score 0.98, RMSD 0.95 Å
7NMS chain A against the predicted model P0DQD2: TM-score 0.98, RMSD 0.95 Å
7PV9 chain C against the predicted model P0DQD2: TM-score 0.98, RMSD 0.94 Å
7PV9 chain C against the predicted model P0DQD2: TM-score 0.98, RMSD 0.94 Å
7PV9 chain B against the predicted model P0DQD2: TM-score 0.96, RMSD 1.49 Å
7PV9 chain A against the predicted model P0DQD2: TM-score 0.95, RMSD 1.60 Å
7PV9 chain A against the predicted model P0DQD2: TM-score 0.95, RMSD 1.60 Å

Elsewhere

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